Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RJW53_RS06210 Genome accession   NZ_CP134488
Coordinates   1199489..1201474 (-) Length   661 a.a.
NCBI ID   WP_012028187.1    Uniprot ID   A0A0H3N3Z6
Organism   Streptococcus suis strain NLS50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1194489..1206474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS06190 (RJW53_06190) - 1194659..1194793 (-) 135 WP_105155173.1 hypothetical protein -
  RJW53_RS06195 (RJW53_06195) - 1194935..1197337 (-) 2403 WP_226319193.1 G5 domain-containing protein -
  RJW53_RS06200 (RJW53_06200) - 1197510..1197608 (-) 99 Protein_1190 UvrB/UvrC motif-containing protein -
  RJW53_RS06205 (RJW53_06205) - 1197651..1199474 (-) 1824 WP_014636397.1 DUF2971 domain-containing protein -
  RJW53_RS06210 (RJW53_06210) uvrB 1199489..1201474 (-) 1986 WP_012028187.1 excinuclease ABC subunit UvrB Machinery gene
  RJW53_RS06215 (RJW53_06215) - 1201672..1203870 (+) 2199 WP_074389340.1 ABC transporter substrate-binding protein/permease -
  RJW53_RS06220 (RJW53_06220) - 1203870..1204610 (+) 741 WP_002935170.1 amino acid ABC transporter ATP-binding protein -
  RJW53_RS06225 (RJW53_06225) - 1204666..1205157 (-) 492 WP_002935171.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 75592.64 Da        Isoelectric Point: 4.5993

>NTDB_id=804102 RJW53_RS06210 WP_012028187.1 1199489..1201474(-) (uvrB) [Streptococcus suis strain NLS50]
MINRNTENQFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNALVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
VTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAA
EVLDFELAAQIRDMVIELKNM

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=804102 RJW53_RS06210 WP_012028187.1 1199489..1201474(-) (uvrB) [Streptococcus suis strain NLS50]
ATGATCAATCGAAATACTGAAAACCAATTTAAACTTGTGTCAAAATATGCACCGTCTGGTGACCAGCCCCAAGCCATTGA
AACCTTGGTTGATAACATCGAGGGGGGCGAAAAAGCCCAGATTCTCATGGGGGCGACTGGTACTGGTAAGACCTATACCA
TGAGCCAGGTTATCGCCCGTGTCAATAAGCCAACCTTGGTCATCGCCCACAACAAGACCTTGGCTGGTCAGCTTTATAGT
GAGTTCAAGGAATTCTTTCCAGAAAATGCGGTCGAATACTTCGTGTCTTACTATGATTACTACCAGCCAGAAGCTTATGT
ACCGTCTAGCGATACCTATATCGAAAAGGATAGTTCGGTCAATGATGAGATTGACAAACTCCGTCACTCTGCGACCTCAG
CTCTGCTAGAACGCAATGATGTCATTGTGGTAGCTTCTGTTTCTTGTATCTACGGTTTGGGTTCACCCAAGGAATATTCA
GATAGCGTGGTCAGCCTGCGACCAGGTCAGGAGATTTCCCGTGATCAGTTGCTCAATGCCTTGGTGGATATCCAGTTTGA
GCGCAACGACATCGACTTCCAACGGGGACGCTTCCGTGTACGTGGAGATGTGGTGGAGATTTTCCCAGCTTCTCGTGATG
AACACGCCTTCCGTGTGGAGTTTTTCGGGGATGAAATTGACCGCATTCGTGAGATTGAAAGCCTGACAGGTAAGGTTTTG
GGCGATGTGGACCACTTGGCGATTTTCCCTGCCACCCACTTCGTGACCAACGATGACCATATGGAAACGGCTATTGCCAA
GATTCAGGCGGAACTGGAAGAGCAGCTCAAGGTCTTTGAGGCAGAAGGAAAACTCTTAGAAGCTCAGCGATTGAAACAAC
GAACCGACTACGATATCGAGATGCTTCGGGAGATGGGCTATACCAACGGAGTTGAGAACTATTCACGACACATGGACGGG
CGAAGTGAGGGGGAGCCTCCTTATACCCTGCTGGACTTTTTCCCTGAGGACTATCTGATTATGATTGACGAGAGCCACAT
GACCATGGGGCAGATTAAGGGGATGTACAATGGTGACCGCTCACGCAAGGAGATGCTGGTTAACTATGGTTTCCGTCTAC
CGAGTGCATTGGATAATCGTCCGCTGCGCAGGGAAGAATTTGAGAGTCATGTCCACCAGATTGTCTATGTATCTGCGACG
CCGGGTGACTATGAAATGGAGCAGACAGAGACCGTTGTCGAGCAGATTATCCGGCCGACCGGGCTTTTGGATCCAGAAGT
GGAAGTCCGTCCAACTATGGGCCAAATGGACGACCTCCTAGGTGAAATCAATGCCCGTGTTGAAAAAGGCGAGCGAACCT
TTATCACTACCCTGACCAAGAAAATGGCAGAGGACTTGACCGACTACCTGAAAGAAATGGGCGTCAAGGTCAAGTATATG
CACTCGGACATCAAGACCTTGGAGCGTACGGAGATTATCCGTGATCTTCGCTTGGGTGTCTTTGATGTTTTGATAGGGAT
TAACCTGCTTCGTGAAGGGATTGACGTGCCAGAAGTTAGTCTAGTCGCTATCTTAGACGCAGACAAGGAGGGCTTCCTCC
GTAATGAACGGGGGCTCATCCAGACAATCGGTCGAGCGGCTCGTAACTCTGAAGGTCATGTGATTATGTATGCGGACAAG
GTCACCGAGTCCATGCGGAAGGCCATGGAAGAAACAGCCCGCCGCCGTCAAATCCAGATGGCTTATAATGAAGAGCATGG
CATTATTCCACAGACCATTAAGAAAGAGATCCGTGACCTGATTAGCGTGACCAAGGCTGTCACTCAGGACAAGGAAGAGG
TTGTGGACTTCAATGCTCTTAATAAAGATGAACGCAAGGCCATGATCAAGAAACTGGAAGGTCAGATGCAGGAAGCCGCA
GAAGTGCTTGACTTTGAACTGGCAGCCCAGATTCGCGATATGGTCATTGAGTTGAAGAATATGTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

Type III restriction enzyme, res subunit (ResIII)

(21-143)

UvrB/uvrC motif (UVR)

(626-660)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N3Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

91.225

100

0.912
  uvrB Streptococcus pneumoniae D39

91.225

100

0.912
  uvrB Streptococcus pneumoniae TIGR4

91.074

100

0.911