Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RJW54_RS03620 Genome accession   NZ_CP134487
Coordinates   731470..732153 (+) Length   227 a.a.
NCBI ID   WP_029178325.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 726470..737153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS03600 (RJW54_03585) - 726533..728044 (+) 1512 WP_029178328.1 ABC transporter permease/substrate-binding protein -
  RJW54_RS03605 (RJW54_03590) - 728056..728817 (+) 762 WP_029174784.1 nuclear transport factor 2 family protein -
  RJW54_RS03610 (RJW54_03595) - 728981..730105 (+) 1125 WP_029178327.1 aminotransferase -
  RJW54_RS03615 (RJW54_03600) - 730120..731301 (-) 1182 WP_029178326.1 DUF2974 domain-containing protein -
  RJW54_RS03620 (RJW54_03605) braR 731470..732153 (+) 684 WP_029178325.1 response regulator transcription factor Regulator
  RJW54_RS03625 (RJW54_03610) - 732146..733138 (+) 993 WP_024382816.1 HAMP domain-containing sensor histidine kinase -
  RJW54_RS03630 (RJW54_03615) - 733236..733994 (+) 759 WP_022540669.1 ABC transporter ATP-binding protein -
  RJW54_RS03635 (RJW54_03620) - 733996..736008 (+) 2013 WP_002936720.1 ABC transporter permease -
  RJW54_RS03640 (RJW54_03625) - 736198..736362 (+) 165 WP_002936715.1 hypothetical protein -
  RJW54_RS03645 (RJW54_03630) - 736359..736676 (+) 318 WP_002936711.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26590.80 Da        Isoelectric Point: 4.6255

>NTDB_id=803993 RJW54_RS03620 WP_029178325.1 731470..732153(+) (braR) [Streptococcus suis strain MY1C3_3B]
MQKILLIEDDKTIRQLVAKNLINWGYQVQEVKDFQTVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVGREELMRELWNSDIFVDDNTLSVNIARLRKKLAELDLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=803993 RJW54_RS03620 WP_029178325.1 731470..732153(+) (braR) [Streptococcus suis strain MY1C3_3B]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGGCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGACGGTGTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTTCCCATTATGTTTCTATCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCTTATGGACAGGTTGTGGAAGAACTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCGGCCGTGAGGAGTTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAATATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGATCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

96.035

0.454
  vicR Streptococcus mutans UA159

38.696

100

0.392
  micA Streptococcus pneumoniae Cp1015

37.555

100

0.379