Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   RJW54_RS01775 Genome accession   NZ_CP134487
Coordinates   356223..358241 (+) Length   672 a.a.
NCBI ID   WP_043033037.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 351223..363241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS01775 (RJW54_01765) recG/mmsA 356223..358241 (+) 2019 WP_043033037.1 ATP-dependent DNA helicase RecG Machinery gene
  RJW54_RS01780 (RJW54_01770) - 358305..359264 (-) 960 WP_024394819.1 asparaginase -
  RJW54_RS01785 (RJW54_01775) - 359333..360698 (+) 1366 Protein_313 Cof-type HAD-IIB family hydrolase -
  RJW54_RS01790 (RJW54_01780) - 360714..361166 (-) 453 WP_004195772.1 universal stress protein -
  RJW54_RS01795 (RJW54_01785) - 361321..362535 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75638.17 Da        Isoelectric Point: 6.4081

>NTDB_id=803976 RJW54_RS01775 WP_043033037.1 356223..358241(+) (recG/mmsA) [Streptococcus suis strain MY1C3_3B]
MKRLCDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDFESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRL
RFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQLQLQMLKANNRDISNGLKIAYDA
DRLAMQIRHLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFE
SLRQLFPELSIALLTGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNP
DVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLESELKVGAQVYFISPLIEESEALDLK
NAVDLQSDLQAHFGEQVAVDLLHGKMKNDEKDTIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR
RVASQIVSVENWQEDPNWSILLANLKDREELD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=803976 RJW54_RS01775 WP_043033037.1 356223..358241(+) (recG/mmsA) [Streptococcus suis strain MY1C3_3B]
ATGAAAAGATTATGTGATGAATTATCGGTTTTGCCAGGGATTGGTCCTAAATCGGCTGAAAAATTCTTAAAAATTAACAT
TCAGAATATTAATGATTTGCTGACTTACTATCCATTTAGATATGAAGATTTTGAGAGTAAGTCTATTTATGATTTGCAGG
ACGGGGAGAAGGCAGTGGTAGTTGGGGAGGTGGTATCTCCAGCTAATGTACAGTATTATGGTTACAAAAGAAATAGACTC
CGTTTTTCAATGAAACAGGGTGAGGTTGTCTTAGCAGTTTCGTTTTTTAATCAGCCTTATTTAGCAGATAAGATTGTTTT
GGGGCAGGATATTGCAGTTTGGGGAAAGTGGGATAAAGCTAAGGCAAGTTTGACAGGAATGAAAATTTTGGCTCAAGTAT
CAGATGAGCTCCAACCTGTCTATCATGTGGCGCAAGGGATTTCGCAAGTAAATTTGGTTAAGGCTATTAAAACAGCTATT
GATCAGGGATATTTGCATTTATTAGAGGAGAACTTGCCATCAGTTTTACGAGAGCGCTATCGGTTAATGAATCGCCGAGA
GGCGGTTTTTGCGATGCATTTTCCTACAAATTTAGAAGAGTATAGACAAGCTTTGCGACGTATGAAGTTTGAGGAATTAT
TTTATTTTCAATTACAGTTGCAAATGCTGAAAGCCAACAATCGTGATATTTCGAATGGTTTGAAGATTGCCTATGATGCT
GATAGATTGGCTATGCAAATAAGACACTTGCCGTTTGTCTTAACAGATGCTCAATCTGGGGCTTTGGCTGAAATACTATC
AGATATGAAGTCCTATGGGCACATGAATCGTTTGTTACAAGGGGATGTTGGTTCAGGGAAGACAGTAGTTGCTGGATTGG
CTATGTTTGCCGCTGTGACTGCGGGGATGCAGGCTGCAATTATGGTGCCGACAGAAATTTTGGCTGAGCAACACTTTGAG
AGTTTGCGCCAGCTTTTTCCAGAACTTTCTATTGCTCTTTTGACAGGGGGAATGAAGGCTGCGGAGCGTCGTACTGCTTT
AGAGGCGATTTCTAGTGGTCAGGTAGACATCATTGTAGGAACTCACGCTCTTATCCAGGAAAGTGTGACGTATCATAAGC
TTGGTTTGGTTGTGACGGATGAGCAACATCGTTTTGGTGTTAAACAGCGCCGTCTGTTTCGTGAGAAGGGTGATAATCCG
GATGTGCTTATGATGACTGCTACACCTATTCCTCGGACGTTAGCCATTACAGCTTTTGGAGATATGGATGTATCGATTAT
TAATCAGTTACCTGCTGGTCGGAAGCCAATTATCACTCGCTGGGTCAAACATCAACAGCTACCCACGGTCTTAGATTGGT
TGGAGAGTGAGTTAAAAGTAGGTGCTCAGGTTTATTTTATCTCTCCGCTGATTGAAGAATCTGAGGCTCTAGATTTAAAG
AATGCTGTAGATCTGCAGTCTGATTTACAGGCGCATTTTGGAGAGCAAGTTGCAGTGGATTTGTTACACGGTAAGATGAA
GAATGACGAGAAAGATACCATCATGCAGGCTTTTAAGGAGCGAAAAACGAATATTTTGGTTTCTACCACTGTTATTGAAG
TCGGAGTCAATGTGCCCAATGCAACGGTGATGGTTATTATGGATGCAGATCGTTTTGGTTTAAGCCAATTACATCAGTTG
AGAGGGCGTGTAGGACGTGGTCATAAGCAGTCTTATGCAGTGTTAGTTGCTAATCCTAAAACAGAGTCTGGTAAGGAACG
CATGAAAATTATGACAGAGACGACAGATGGTTTTATTTTGGCTGAAGCTGACTTAAAAATGCGTGGGTCTGGAGAAATAT
TTGGGACTCGTCAATCAGGTTTGCCAGAATTTCAGGTTGCAAATATTATCGAGGACTATCCAATTTTAGAGGAAGCAAGA
CGAGTTGCTAGTCAGATTGTTAGCGTGGAAAATTGGCAGGAGGACCCTAATTGGTCGATTTTGCTTGCTAATTTGAAAGA
TCGAGAGGAATTGGACTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(458-567)

DEAD/DEAH box helicase (DEAD)

(255-410)

RecG wedge domain (RecG_wedge)

(13-160)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.347

99.554

0.72
  recG/mmsA Streptococcus pneumoniae R36A

72.347

99.554

0.72
  recG Bacillus subtilis subsp. subtilis str. 168

49.091

98.214

0.482
  recG Neisseria meningitidis strain C311

40.184

97.024

0.39