Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RJW49_RS05440 Genome accession   NZ_CP134477
Coordinates   1030325..1032310 (+) Length   661 a.a.
NCBI ID   WP_074393448.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025325..1037310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS05425 (RJW49_05425) - 1026444..1026935 (+) 492 WP_011922516.1 GNAT family N-acetyltransferase -
  RJW49_RS05430 (RJW49_05430) - 1027189..1027929 (-) 741 WP_002940438.1 amino acid ABC transporter ATP-binding protein -
  RJW49_RS05435 (RJW49_05435) - 1027929..1030127 (-) 2199 WP_074393447.1 ABC transporter substrate-binding protein/permease -
  RJW49_RS05440 (RJW49_05440) uvrB 1030325..1032310 (+) 1986 WP_074393448.1 excinuclease ABC subunit UvrB Machinery gene
  RJW49_RS05445 (RJW49_05445) - 1032497..1036693 (+) 4197 WP_253183053.1 G5 domain-containing protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 75599.63 Da        Isoelectric Point: 4.6358

>NTDB_id=803908 RJW49_RS05440 WP_074393448.1 1030325..1032310(+) (uvrB) [Streptococcus suis strain NLS40]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVQSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSKGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
VTESMRKAMDETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALSKDERKAMIKKLEGQMQEAA
EVLDFELAAQIRDMVIELKNM

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=803908 RJW49_RS05440 WP_074393448.1 1030325..1032310(+) (uvrB) [Streptococcus suis strain NLS40]
ATGATCAATCGAAATACTGAAAACCAATTTAAACTTGTATCTAAATACTCACCGTCTGGTGACCAGCCCCAAGCCATTGA
AACCTTGGTTGATAACATCGAGGGGGGCGAAAAAGCCCAGATTCTCATGGGGGCGACGGGTACTGGTAAGACCTACACTA
TGAGTCAGGTCATCGCCCGTGTCAATAAGCCGACCTTAGTCATCGCCCACAACAAGACCTTGGCTGGTCAGCTCTACAGT
GAGTTCAAGGAATTCTTCCCAGAAAATGCGGTCGAATACTTCGTATCTTACTATGATTACTACCAGCCAGAAGCTTATGT
ACAGTCTAGCGATACCTATATTGAGAAGGACAGTTCGGTCAATGATGAGATTGACAAACTCCGTCACTCTGCGACTTCAG
CTCTGCTAGAACGCAATGATGTCATCGTCGTTGCCTCCGTTTCCTGTATCTACGGTTTGGGATCGCCCAAGGAATATTCA
GATAGCGTGGTCAGTCTGCGACCAGGTCAGGAGATTTCCCGTGATCAGTTGCTCAATTCTCTGGTGGATATCCAGTTTGA
GCGGAACGACATCGACTTCCAACGGGGACGGTTCCGTGTACGTGGCGATGTGGTGGAGATTTTCCCGGCTTCTCGAGATG
AACACGCCTTCCGTGTGGAGTTTTTCGGTGATGAAATCGACCGTATTCGTGAGATTGAAAGCCTGACTGGGAAGGTTTTG
GGCGATGTGGACCACTTGGCGATTTTCCCTGCTACCCACTTCGTGACCAACGATGACCATATGGAAACGGCTATTGCCAA
GATTCAGGCGGAACTGGAAGAGCAACTCAAGGTCTTTGAGGCAGAAGGAAAACTCTTAGAAGCTCAGCGATTGAAACAAC
GAACCGACTATGATATCGAGATGCTTCGGGAAATGGGTTACACAAACGGAGTCGAGAACTATTCACGACACATGGACGGG
CGAAGCAAGGGCGAGCCTCCGTACACACTACTGGACTTTTTCCCTGAAGACTACCTGATTATGATTGACGAGAGCCACAT
GACCATGGGGCAGATTAAGGGAATGTACAATGGTGACCGCTCACGCAAGGAGATGTTGGTCAACTATGGTTTCCGCCTCC
CGAGTGCACTGGATAATCGTCCGCTGCGCAGGGAAGAATTTGAGAGTCATGTCCACCAGATTGTCTATGTATCTGCGACG
CCGGGTGATTATGAAATGGAGCAGACCGATACCGTTGTCGAGCAGATTATTCGGCCGACAGGGCTTTTGGATCCAGAGGT
GGAAGTCCGTCCAACCATGGGCCAAATGGACGACCTTTTAGGTGAAATCAATGCCCGTGTTGAAAAAGGCGAGCGGACCT
TTATTACCACCCTGACCAAGAAAATGGCAGAGGACTTGACCGACTACCTGAAAGAAATGGGTGTCAAGGTCAAGTATATG
CACTCGGACATCAAGACCTTGGAGCGTACGGAGATTATCCGTGATTTGCGTTTGGGCGTCTTTGATGTCTTGATAGGGAT
TAACCTCTTGCGTGAAGGGATTGACGTGCCAGAAGTCAGTCTGGTTGCTATTCTAGATGCTGACAAGGAAGGTTTCCTCC
GTAATGAACGAGGGCTCATCCAGACAATTGGTCGGGCAGCTCGTAACTCTGAGGGTCATGTGATTATGTATGCGGACAAG
GTCACAGAGTCCATGCGCAAGGCTATGGACGAAACCGCCCGCCGCCGTCAAATCCAGATGGCTTATAATGAAGAACATGG
TATTATCCCACAAACTATCAAGAAAGAAATCCGTGACCTGATTAGCGTGACCAAGGCTGTCACTCAGGACAAGGAAGAAG
TGGTGGACTTCAATGCCCTCAGCAAAGACGAACGCAAGGCTATGATCAAGAAACTGGAAGGTCAAATGCAGGAAGCTGCA
GAAGTGCTTGACTTTGAACTGGCAGCCCAGATTCGTGATATGGTCATTGAATTGAAGAATATGTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB interaction domain (UvrB_inter)

(164-254)

Type III restriction enzyme, res subunit (ResIII)

(20-143)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

UvrB/uvrC motif (UVR)

(626-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

90.772

100

0.908
  uvrB Streptococcus pneumoniae D39

90.772

100

0.908
  uvrB Streptococcus pneumoniae TIGR4

90.62

100

0.906