Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U54_RS14115 Genome accession   NZ_CP120155
Coordinates   2848997..2849530 (-) Length   177 a.a.
NCBI ID   WP_016999204.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain Dog026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2843997..2854530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U54_RS14085 (P3U54_14090) - 2844472..2845260 (+) 789 WP_103268555.1 hypothetical protein -
  P3U54_RS14090 (P3U54_14095) - 2845472..2845945 (+) 474 WP_323710775.1 pyrimidine dimer DNA glycosylase/endonuclease V -
  P3U54_RS14095 (P3U54_14100) - 2845999..2846379 (+) 381 WP_323710776.1 DUF1722 domain-containing protein -
  P3U54_RS14100 (P3U54_14105) - 2846400..2847239 (-) 840 WP_064204289.1 DUF2785 domain-containing protein -
  P3U54_RS14105 (P3U54_14110) - 2847496..2848485 (+) 990 WP_103268558.1 Abi family protein -
  P3U54_RS14110 (P3U54_14115) rpsR 2848700..2848942 (-) 243 WP_016999205.1 30S ribosomal protein S18 -
  P3U54_RS14115 (P3U54_14120) ssbA 2848997..2849530 (-) 534 WP_016999204.1 single-stranded DNA-binding protein Machinery gene
  P3U54_RS14120 (P3U54_14125) rpsF 2849561..2849854 (-) 294 WP_016999203.1 30S ribosomal protein S6 -
  P3U54_RS14125 (P3U54_14130) ychF 2849973..2851073 (-) 1101 WP_016999202.1 redox-regulated ATPase YchF -
  P3U54_RS14130 (P3U54_14135) - 2851075..2851272 (-) 198 WP_016999201.1 DUF951 domain-containing protein -
  P3U54_RS14135 (P3U54_14140) - 2851296..2852180 (-) 885 WP_016999200.1 mechanosensitive ion channel family protein -
  P3U54_RS14140 (P3U54_14145) - 2852193..2853026 (-) 834 WP_323710777.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19815.49 Da        Isoelectric Point: 4.9532

>NTDB_id=803898 P3U54_RS14115 WP_016999204.1 2848997..2849530(-) (ssbA) [Mammaliicoccus lentus strain Dog026]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=803898 P3U54_RS14115 WP_016999204.1 2848997..2849530(-) (ssbA) [Mammaliicoccus lentus strain Dog026]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATCATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCA
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.538

100

0.633
  ssb Latilactobacillus sakei subsp. sakei 23K

55.056

100

0.554
  ssb Vibrio cholerae strain A1552

35.359

100

0.362