Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RJW55_RS08140 Genome accession   NZ_CP134473
Coordinates   1755994..1756677 (-) Length   227 a.a.
NCBI ID   WP_029174325.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750994..1761677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS08115 (RJW55_08115) - 1751507..1751824 (-) 318 WP_043025374.1 PadR family transcriptional regulator -
  RJW55_RS08120 (RJW55_08120) - 1751821..1751985 (-) 165 WP_043025372.1 hypothetical protein -
  RJW55_RS08125 (RJW55_08125) - 1752162..1754165 (-) 2004 WP_043033258.1 ABC transporter permease -
  RJW55_RS08130 (RJW55_08130) - 1754167..1754925 (-) 759 WP_024382815.1 ABC transporter ATP-binding protein -
  RJW55_RS08135 (RJW55_08135) - 1755021..1756001 (-) 981 WP_172073064.1 ATP-binding protein -
  RJW55_RS08140 (RJW55_08140) braR 1755994..1756677 (-) 684 WP_029174325.1 response regulator transcription factor Regulator
  RJW55_RS08145 (RJW55_08145) - 1756821..1758002 (+) 1182 WP_172073063.1 DUF2974 domain-containing protein -
  RJW55_RS08150 (RJW55_08150) - 1758017..1759141 (-) 1125 WP_043024985.1 aminotransferase -
  RJW55_RS08155 (RJW55_08155) - 1759292..1760053 (-) 762 WP_043024987.1 nuclear transport factor 2 family protein -
  RJW55_RS08160 (RJW55_08160) - 1760063..1761577 (-) 1515 WP_043024989.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26639.84 Da        Isoelectric Point: 4.6255

>NTDB_id=803825 RJW55_RS08140 WP_029174325.1 1755994..1756677(-) (braR) [Streptococcus suis strain TMW_SS028]
MQKILVIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEVSLDLKTMQVSYKQDVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELNLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=803825 RJW55_RS08140 WP_029174325.1 1755994..1756677(-) (braR) [Streptococcus suis strain TMW_SS028]
ATGCAAAAGATTTTAGTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTATCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTGCTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTATCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGCGAACAAAGTTTGCTCTGGTTTGAAGAAG
TTTCCTTGGACTTGAAGACCATGCAGGTGTCCTATAAACAGGATGTAGAGGAATTGACCCGAAATGAATTTCAGATTTTA
CGGGTGCTTTTTGAACATGGCAAGGAAGTCGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAAAAGTTGGCAGAACTGAATCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.706

96.035

0.458
  vicR Streptococcus mutans UA159

39.301

100

0.396
  micA Streptococcus pneumoniae Cp1015

38.596

100

0.388