Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RJW55_RS05555 Genome accession   NZ_CP134473
Coordinates   1146176..1148161 (+) Length   661 a.a.
NCBI ID   WP_043025424.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141176..1153161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS05540 (RJW55_05540) - 1142491..1142982 (+) 492 WP_043025427.1 GNAT family N-acetyltransferase -
  RJW55_RS05545 (RJW55_05545) - 1143040..1143780 (-) 741 WP_029173653.1 amino acid ABC transporter ATP-binding protein -
  RJW55_RS05550 (RJW55_05550) - 1143780..1145978 (-) 2199 WP_043025426.1 ABC transporter substrate-binding protein/permease -
  RJW55_RS05555 (RJW55_05555) uvrB 1146176..1148161 (+) 1986 WP_043025424.1 excinuclease ABC subunit UvrB Machinery gene
  RJW55_RS05560 (RJW55_05560) - 1148605..1149027 (+) 423 WP_052497022.1 YSIRK signal domain/LPXTG anchor domain surface protein -
  RJW55_RS05565 (RJW55_05565) - 1149134..1149637 (+) 504 WP_043026942.1 GNAT family N-acetyltransferase -
  RJW55_RS05570 (RJW55_05570) - 1149630..1150097 (+) 468 WP_029174397.1 8-oxo-dGTP diphosphatase -
  RJW55_RS05575 (RJW55_05575) - 1150296..1151105 (+) 810 WP_079395334.1 transporter substrate-binding domain-containing protein -
  RJW55_RS05580 (RJW55_05580) - 1151277..1152077 (+) 801 WP_043026940.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 75610.55 Da        Isoelectric Point: 4.5993

>NTDB_id=803812 RJW55_RS05555 WP_043025424.1 1146176..1148161(+) (uvrB) [Streptococcus suis strain TMW_SS028]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
VTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDERKAMIKKLESQMQEAA
EVLDFELAAQIRDMVIELKNT

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=803812 RJW55_RS05555 WP_043025424.1 1146176..1148161(+) (uvrB) [Streptococcus suis strain TMW_SS028]
ATGATTAATCGAAATACTGAAAACCAATTTAAACTTGTATCGAAATATTCCCCATCTGGCGACCAGCCCCAAGCCATTGA
AACCTTGGTTGATAACATCGAGGGGGGCGAAAAAGCCCAGATTCTCATGGGGGCGACTGGTACTGGTAAGACCTACACCA
TGAGTCAGGTCATTGCCCGTGTCAATAAGCCCACTCTGGTTATCGCCCACAACAAGACCTTGGCTGGTCAGCTTTATAGT
GAGTTCAAAGAGTTCTTCCCAGAAAATGCGGTAGAATACTTCGTGTCCTACTACGATTACTACCAGCCCGAAGCCTATGT
CCCGTCCAGCGATACCTATATTGAGAAGGATAGCTCGGTCAATGATGAGATTGACAAACTCCGTCACTCAGCAACCTCAG
CCCTGCTGGAGCGAAACGATGTTATTGTTGTAGCTTCGGTTTCTTGTATCTATGGTTTGGGTTCGCCCAAGGAATATTCT
GACAGCGTGGTCAGTCTGCGACCAGGTCAGGAGATTTCCCGTGACCAGTTGCTCAATTCTCTGGTAGATATCCAGTTTGA
GCGCAACGACATTGACTTCCAACGGGGCCGTTTCCGTGTGCGTGGGGATGTAGTAGAAGTCTTTCCAGCCTCCCGTGATG
AACACGCCTTCCGTGTGGAATTTTTCGGCGATGAAATCGACCGCATTCGTGAGATTGAAAGCCTGACTGGGAAGGTTTTG
GGGGATGTGGATCACTTGGCGATTTTCCCTGCCACCCACTTCGTGACCAACGATGACCACATGGAAACGGCTATTGCCAA
GATTCAGGCGGAACTGGAAGAGCAGCTCAAGGTCTTTGAGGCAGAAGGAAAACTCTTAGAAGCTCAGCGATTGAAACAAC
GAACCGACTACGACATCGAGATGCTACGGGAAATGGGCTACACCAACGGAGTTGAGAACTATTCTCGACACATGGACGGG
CGAAGCGAGGGCGAGCCTCCTTATACTCTGCTGGACTTTTTCCCTGAAGATTACCTGATTATGATTGACGAGAGCCACAT
GACCATGGGGCAGATTAAGGGTATGTACAATGGTGACCGCTCACGCAAGGAGATGTTGGTCAACTATGGTTTCCGCCTCC
CGAGTGCACTGGACAACCGTCCGCTGCGCAGGGAAGAATTTGAGAGCCATGTCCATCAGATTGTCTATGTATCTGCGACG
CCGGGTGACTATGAAATGGAGCAGACAGAGACCGTTGTCGAGCAGATTATCCGGCCAACAGGGCTTTTGGATCCAGAAGT
AGAAGTCCGTCCAACCATGGGGCAAATGGACGACCTTTTGGGCGAAATCAATGCCCGTGTTGAGAAAGGTGAGCGAACCT
TTATCACTACCCTGACCAAGAAAATGGCAGAGGACTTGACCGACTACCTGAAAGAAATGGGCGTCAAGGTCAAGTATATG
CATTCGGACATCAAGACCTTGGAGCGTACGGAGATTATCCGCGATTTGCGTTTGGGCGTCTTTGATGTCTTGATAGGGAT
TAACCTCTTGCGTGAAGGGATTGACGTGCCAGAAGTTAGTCTGGTCGCTATCTTGGACGCAGATAAGGAAGGTTTCCTCC
GAAACGAGCGTGGACTCATCCAGACAATCGGTCGGGCGGCCCGTAACTCTGAAGGTCATGTGATTATGTATGCGGACAAG
GTCACCGAGTCTATGCGGAAAGCCATGGAGGAGACAGCCCGCCGCCGTCAAATCCAGATGGCTTATAATGAAGAACATGG
CATCATTCCACAGACCATTAAGAAAGAAATCCGCGATCTGATTAGCGTGACTAAGGCTGTCACTCAGGACAAGGAAGAAG
TGGTGGACTTCAATGCTCTTAATAAAGATGAACGTAAGGCTATGATCAAGAAACTGGAAAGTCAAATGCAGGAAGCAGCA
GAAGTGCTTGACTTTGAACTGGCAGCCCAGATTCGCGACATGGTCATCGAGTTGAAGAATACGTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

Type III restriction enzyme, res subunit (ResIII)

(20-143)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

UvrB/uvrC motif (UVR)

(626-660)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

91.351

99.697

0.911
  uvrB Streptococcus pneumoniae D39

91.351

99.697

0.911
  uvrB Streptococcus pneumoniae TIGR4

91.199

99.697

0.909