Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJW55_RS02105 Genome accession   NZ_CP134473
Coordinates   437084..437578 (+) Length   164 a.a.
NCBI ID   WP_043027279.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 432084..442578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS02085 (RJW55_02085) - 432102..433490 (+) 1389 WP_043027280.1 dihydrolipoamide acetyltransferase -
  RJW55_RS02090 (RJW55_02090) lpdA 433760..435520 (+) 1761 WP_172073153.1 dihydrolipoyl dehydrogenase -
  RJW55_RS02095 (RJW55_02095) - 435621..436610 (+) 990 WP_043027278.1 lipoate--protein ligase -
  RJW55_RS02100 (RJW55_02100) rpsF 436782..437072 (+) 291 WP_002942403.1 30S ribosomal protein S6 -
  RJW55_RS02105 (RJW55_02105) ssbA 437084..437578 (+) 495 WP_043027279.1 single-stranded DNA-binding protein Machinery gene
  RJW55_RS02110 (RJW55_02110) rpsR 437611..437850 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  RJW55_RS02115 (RJW55_02115) tnpA 438228..438585 (+) 358 Protein_380 IS200/IS605 family transposase -
  RJW55_RS02120 (RJW55_02120) - 438723..439379 (-) 657 WP_012027735.1 DUF1129 domain-containing protein -
  RJW55_RS02125 (RJW55_02125) - 439395..440339 (-) 945 WP_002939248.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18132.89 Da        Isoelectric Point: 4.7294

>NTDB_id=803786 RJW55_RS02105 WP_043027279.1 437084..437578(+) (ssbA) [Streptococcus suis strain TMW_SS028]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGTLIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=803786 RJW55_RS02105 WP_043027279.1 437084..437578(+) (ssbA) [Streptococcus suis strain TMW_SS028]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTACTCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366