Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RJW55_RS00390 Genome accession   NZ_CP134473
Coordinates   72026..72616 (+) Length   196 a.a.
NCBI ID   WP_043025669.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67026..77616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS00380 (RJW55_00380) - 68409..69932 (+) 1524 WP_043025665.1 quinol oxidase -
  RJW55_RS00385 (RJW55_00385) hexB 70050..71987 (+) 1938 WP_043025667.1 DNA mismatch repair endonuclease MutL Machinery gene
  RJW55_RS00390 (RJW55_00390) ruvA 72026..72616 (+) 591 WP_043025669.1 Holliday junction branch migration protein RuvA Machinery gene
  RJW55_RS00395 (RJW55_00395) - 73221..73790 (+) 570 WP_043025096.1 DNA-3-methyladenine glycosylase I -
  RJW55_RS00400 (RJW55_00400) cinA 73827..75008 (+) 1182 WP_043025095.1 competence/damage-inducible protein A Machinery gene
  RJW55_RS00405 (RJW55_00405) recA 75060..76211 (+) 1152 WP_004195473.1 recombinase RecA Machinery gene
  RJW55_RS00410 (RJW55_00410) spx 76371..76769 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  RJW55_RS00415 (RJW55_00415) - 76876..77142 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RJW55_RS00420 (RJW55_00420) ruvX 77142..77561 (+) 420 WP_061756370.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21699.08 Da        Isoelectric Point: 5.0653

>NTDB_id=803765 RJW55_RS00390 WP_043025669.1 72026..72616(+) (ruvA) [Streptococcus suis strain TMW_SS028]
MYDYIKGILTKITAKYIVVETYGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQPVAPASENIALDEAMEAME
ALGYRPAELKKIKKFFDGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=803765 RJW55_RS00390 WP_043025669.1 72026..72616(+) (ruvA) [Streptococcus suis strain TMW_SS028]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATCACTGCAAAGTATATTGTGGTAGAAACGTATGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTTCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGCCTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTCCAACCAGTAGCACCTGCCAGTGAAAATATTGCCCTCGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTCGACGGTACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCACTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.127

100

0.755
  ruvA Streptococcus pneumoniae D39

75.127

100

0.755
  ruvA Streptococcus pneumoniae TIGR4

75.127

100

0.755
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.424

100

0.398