Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RJW56_RS08040 Genome accession   NZ_CP134472
Coordinates   1615612..1616295 (-) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610612..1621295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS08015 (RJW56_08015) - 1611088..1611405 (-) 318 WP_002936711.1 PadR family transcriptional regulator -
  RJW56_RS08020 (RJW56_08020) - 1611402..1611566 (-) 165 WP_002936715.1 hypothetical protein -
  RJW56_RS08025 (RJW56_08025) - 1611757..1613769 (-) 2013 WP_002936720.1 ABC transporter permease -
  RJW56_RS08030 (RJW56_08030) - 1613771..1614529 (-) 759 WP_022540669.1 ABC transporter ATP-binding protein -
  RJW56_RS08035 (RJW56_08035) - 1614627..1615619 (-) 993 WP_172051242.1 ATP-binding protein -
  RJW56_RS08040 (RJW56_08040) braR 1615612..1616295 (-) 684 WP_002936735.1 response regulator transcription factor Regulator
  RJW56_RS08045 (RJW56_08045) - 1616465..1617634 (+) 1170 WP_002936737.1 DUF2974 domain-containing protein -
  RJW56_RS08050 (RJW56_08050) - 1617649..1618773 (-) 1125 WP_024395016.1 aminotransferase -
  RJW56_RS08055 (RJW56_08055) - 1618921..1619682 (-) 762 WP_002936743.1 nuclear transport factor 2 family protein -
  RJW56_RS08060 (RJW56_08060) - 1619692..1621203 (-) 1512 WP_024395015.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=803733 RJW56_RS08040 WP_002936735.1 1615612..1616295(-) (braR) [Streptococcus suis strain 1522228]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=803733 RJW56_RS08040 WP_002936735.1 1615612..1616295(-) (braR) [Streptococcus suis strain 1522228]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCGTTTTTCAATGGTTATTACTGGTGTCAGGAAATTCGCAAGACCTCCCGTGTGCCCATTATGTTTCTTTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCTAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTTAACATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383