Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RJW56_RS06625 Genome accession   NZ_CP134472
Coordinates   1359594..1360292 (-) Length   232 a.a.
NCBI ID   WP_002935052.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354594..1365292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS06605 (RJW56_06605) - 1355520..1355879 (+) 360 WP_024394772.1 SAG1252 family conjugative relaxosome accessory protein -
  RJW56_RS06610 (RJW56_06610) mobC 1355889..1356254 (+) 366 WP_172092919.1 plasmid mobilization relaxosome protein MobC -
  RJW56_RS06615 (RJW56_06615) - 1356241..1358100 (+) 1860 WP_311063487.1 SAG1250 family conjugative relaxase -
  RJW56_RS06620 (RJW56_06620) - 1358223..1359578 (-) 1356 Protein_1266 sensor histidine kinase -
  RJW56_RS06625 (RJW56_06625) scnR 1359594..1360292 (-) 699 WP_002935052.1 response regulator transcription factor Regulator
  RJW56_RS06630 (RJW56_06630) - 1360647..1360802 (+) 156 WP_002935049.1 lacticin 481 family lantibiotic -
  RJW56_RS06635 (RJW56_06635) - 1360831..1360986 (+) 156 WP_002935048.1 lacticin 481 family lantibiotic -
  RJW56_RS06640 (RJW56_06640) - 1361525..1361692 (+) 168 WP_074391117.1 lacticin 481 family lantibiotic -
  RJW56_RS06645 (RJW56_06645) - 1361711..1364491 (+) 2781 WP_170238065.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26300.45 Da        Isoelectric Point: 5.1495

>NTDB_id=803727 RJW56_RS06625 WP_002935052.1 1359594..1360292(-) (scnR) [Streptococcus suis strain 1522228]
MGFEIQLLNKHILIVDDDIALSESIKEVLMSRGFKNISFAYSISEGIDIFSVSQIDLIILDVMLPDGEGYLLSKYVRKTS
DVPILFLTAKNNPDDEINGLDSGGDDYVTKPFLPKSLTYRIMALLRRAYRDESELIELTDCTIDLNNASVKKSNQNFSLT
PTEIQILRKLFTNKNYIVSTETICDTIWGLDSFGYEKSLMVHIRNIREKIEIIPSKPKHLITVKGLGYKLAI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=803727 RJW56_RS06625 WP_002935052.1 1359594..1360292(-) (scnR) [Streptococcus suis strain 1522228]
ATGGGTTTTGAAATACAATTGTTGAATAAACATATACTAATTGTGGATGATGACATCGCATTAAGCGAATCAATCAAAGA
AGTGCTCATGAGTCGTGGCTTCAAAAATATTAGTTTTGCTTATAGTATTAGCGAAGGTATTGATATTTTTTCAGTATCTC
AAATTGATTTAATTATTCTAGATGTCATGTTACCAGATGGTGAAGGCTATTTACTTTCCAAATATGTAAGAAAGACATCT
GATGTCCCAATTCTATTCTTAACTGCTAAAAATAATCCTGATGATGAAATAAATGGGCTTGACTCAGGAGGAGATGACTA
TGTTACAAAGCCATTTTTACCTAAATCTTTAACTTACCGTATAATGGCATTGTTGAGAAGAGCTTACCGAGATGAATCTG
AACTCATTGAATTAACAGATTGCACAATTGACTTGAATAATGCAAGCGTAAAAAAAAGTAATCAAAATTTTTCACTGACC
CCTACTGAAATTCAAATTCTTAGAAAGCTATTTACCAACAAAAATTACATCGTTTCCACAGAGACAATATGTGATACTAT
TTGGGGATTAGATAGCTTTGGATATGAAAAATCCTTAATGGTCCATATACGCAATATTCGAGAAAAAATCGAAATTATAC
CTTCCAAGCCAAAGCATCTAATTACCGTTAAAGGGCTTGGATATAAACTTGCTATTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.152

96.121

0.405
  vicR Streptococcus mutans UA159

38.428

98.707

0.379
  micA Streptococcus pneumoniae Cp1015

37.719

98.276

0.371