Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L6438_RS18890 Genome accession   NZ_AP022975
Coordinates   3648651..3649889 (-) Length   412 a.a.
NCBI ID   WP_236787053.1    Uniprot ID   -
Organism   Bacillus cereus strain 30040     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3643651..3654889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6438_RS18870 (BC30040_3724) - 3644277..3644699 (-) 423 Protein_3674 DNA recombination/repair protein RecA -
  L6438_RS18875 - 3645027..3645266 (-) 240 Protein_3675 DNA recombination/repair protein RecA -
  L6438_RS18880 (BC30040_3726) ltrA 3645450..3647393 (-) 1944 WP_236787052.1 group II intron reverse transcriptase/maturase -
  L6438_RS18885 (BC30040_3728) - 3648141..3648506 (-) 366 Protein_3677 ATPase domain-containing protein -
  L6438_RS18890 (BC30040_3729) cinA 3648651..3649889 (-) 1239 WP_236787053.1 competence/damage-inducible protein CinA Machinery gene
  L6438_RS18895 (BC30040_3730) pgsA 3649910..3650488 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L6438_RS18900 (BC30040_3731) - 3650552..3651463 (-) 912 WP_000137484.1 helix-turn-helix domain-containing protein -
  L6438_RS18905 (BC30040_3732) - 3651485..3652270 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  L6438_RS18910 (BC30040_3733) - 3652410..3652658 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  L6438_RS18915 (BC30040_3734) - 3652734..3653447 (-) 714 WP_062923048.1 SDR family oxidoreductase -
  L6438_RS18920 (BC30040_3735) - 3653552..3654838 (-) 1287 WP_062923047.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45350.65 Da        Isoelectric Point: 5.0366

>NTDB_id=80351 L6438_RS18890 WP_236787053.1 3648651..3649889(-) (cinA) [Bacillus cereus strain 30040]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLKQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAKELVYDEKALASISDYFKRTGREFTENNKKQALVLDGAAVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTEGAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=80351 L6438_RS18890 WP_236787053.1 3648651..3649889(-) (cinA) [Bacillus cereus strain 30040]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGAAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGAAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAGCTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGGGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAGGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment