Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RJ561_RS06015 Genome accession   NZ_CP134393
Coordinates   1274868..1276844 (-) Length   658 a.a.
NCBI ID   WP_310957379.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003-50-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269868..1281844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ561_RS05990 (RJ561_05990) - 1269959..1270351 (+) 393 WP_000656174.1 4Fe-4S dicluster-binding protein -
  RJ561_RS05995 (RJ561_05995) - 1270361..1271584 (+) 1224 WP_220911484.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  RJ561_RS06000 (RJ561_06000) - 1271597..1272541 (+) 945 WP_310957376.1 thiamine pyrophosphate-dependent enzyme -
  RJ561_RS06005 (RJ561_06005) purB 1272651..1273973 (+) 1323 WP_310957377.1 adenylosuccinate lyase -
  RJ561_RS06010 (RJ561_06010) - 1274038..1274871 (+) 834 WP_310957378.1 outer membrane protein -
  RJ561_RS06015 (RJ561_06015) uvrB 1274868..1276844 (-) 1977 WP_310957379.1 excinuclease ABC subunit UvrB Machinery gene
  RJ561_RS06020 (RJ561_06020) - 1276885..1277697 (-) 813 WP_310957380.1 hypothetical protein -
  RJ561_RS06025 (RJ561_06025) - 1277702..1280434 (-) 2733 WP_310957381.1 DUF3519 domain-containing protein -
  RJ561_RS06030 (RJ561_06030) - 1280403..1280603 (+) 201 WP_310957382.1 hypothetical protein -
  RJ561_RS06035 (RJ561_06035) - 1280600..1280840 (+) 241 Protein_1171 hypothetical protein -
  RJ561_RS06040 (RJ561_06040) - 1280844..1281614 (-) 771 WP_041201537.1 HP1117 family Sel1-like repeat protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75945.40 Da        Isoelectric Point: 6.5793

>NTDB_id=803501 RJ561_RS06015 WP_310957379.1 1274868..1276844(-) (uvrB) [Helicobacter pylori strain ICDC15003-50-2]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSTTTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKHAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKNNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
LSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELKLRDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAQLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=803501 RJ561_RS06015 WP_310957379.1 1274868..1276844(-) (uvrB) [Helicobacter pylori strain ICDC15003-50-2]
ATGCCTTTATTTGATTTAAAAAGCCCTTATCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCTTTAACGAAAAGCTT
GAAAAATAACAACCATTATCAAACTCTAGTGGGGGTTACAGGGAGCGGTAAGACTTACACGATGGCCAATATCATCGCTC
AAACCAATAAACCCGCTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAACTTTATAGCGAGTTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAAAGCTATATCCCTAGGAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAACGATGATTTGGAGCGTTTGAGATTGAGCACGACAACCTCGCTTTTAGGTTATGATG
ATGTGATCGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCACGCTTATAAGAGCTTTTTATTAAAGCTAGTGGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACCGGAGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCGGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGCGAGAGGTTGAATTTAGCCATTAAAAGCATTGAAGATGAACTCGC
TTTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCAACCGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTTACAGGCAAAGCCCCTAATGAAACG
CCTTTTTGTTTGTTTGATTATTTAGGGATTTTTGAGCGGGAGTTTTTAGTCATTGTAGATGAAAGCCATGTGAGTTTGCC
GCAATTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAATTAGAGCTTTCTAAGAATAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAGCAGGTCCAGGATTTATTTGATGAAATCAAGTTAGTGGTAGCTAGAGATGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCTGAATGGGGCTTGAAGGTGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGAAATCACATCATCCGCTCTTTAAGGCTTAAAGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAAGGGCTGGATTTGCCTGAAGTTTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAACGGCAAGGTTTTATTATACGCTAAAAAAATCACC
CTAAGCATGCAAAAAGCCTTTGAAATTACAAGTTATAGGCGCGCTAAGCAAGAAGAGTTCAATAAGCTTCATCATATCAC
CCCCAAAACCGTTACTCGCGCTTTAGAAGAGGAGTTGAAATTAAGAGACGATGAGGTTAAAATCGCTAAAGCCTTAAAAA
AGGACAAAATCCCTAAAAGCGAAAGGGAAAAAATCATTAAAGAACTGGATAAAAAAATGCGAGAATGCGCGAAAAACTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGATGAAATCGCTCAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-248)

Type III restriction enzyme, res subunit (ResIII)

(15-137)

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB/uvrC motif (UVR)

(623-657)

Helicase conserved C-terminal domain (Helicase_C)

(445-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.17

100

0.495
  uvrB Streptococcus pneumoniae D39

49.17

100

0.495
  uvrB Streptococcus pneumoniae TIGR4

49.17

100

0.495