Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U62_RS13090 Genome accession   NZ_CP120130
Coordinates   2661567..2662097 (-) Length   176 a.a.
NCBI ID   WP_016912339.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain Dog047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2656567..2667097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U62_RS13065 (P3U62_13065) - 2657268..2658089 (+) 822 WP_016912331.1 hypothetical protein -
  P3U62_RS13070 (P3U62_13070) coaA 2658286..2659188 (+) 903 WP_016912332.1 type I pantothenate kinase -
  P3U62_RS13075 (P3U62_13075) - 2659333..2660223 (-) 891 WP_209354894.1 PhzF family phenazine biosynthesis isomerase -
  P3U62_RS13080 (P3U62_13080) - 2660252..2660956 (-) 705 WP_209354895.1 SAM-dependent methyltransferase -
  P3U62_RS13085 (P3U62_13085) rpsR 2661267..2661509 (-) 243 WP_016912338.1 30S ribosomal protein S18 -
  P3U62_RS13090 (P3U62_13090) ssbA 2661567..2662097 (-) 531 WP_016912339.1 single-stranded DNA-binding protein Machinery gene
  P3U62_RS13095 (P3U62_13095) rpsF 2662127..2662420 (-) 294 WP_016912340.1 30S ribosomal protein S6 -
  P3U62_RS13100 (P3U62_13100) ychF 2662612..2663712 (-) 1101 WP_016912341.1 redox-regulated ATPase YchF -
  P3U62_RS13105 (P3U62_13105) - 2663716..2663913 (-) 198 WP_103323404.1 DUF951 domain-containing protein -
  P3U62_RS13110 (P3U62_13110) - 2663937..2664821 (-) 885 WP_016912343.1 mechanosensitive ion channel family protein -
  P3U62_RS13115 (P3U62_13115) - 2664835..2665671 (-) 837 WP_016912344.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19597.19 Da        Isoelectric Point: 4.7512

>NTDB_id=803373 P3U62_RS13090 WP_016912339.1 2661567..2662097(-) (ssbA) [Mammaliicoccus vitulinus strain Dog047]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNSQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSNNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNNQQSSNPF
ANANGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=803373 P3U62_RS13090 WP_016912339.1 2661567..2662097(-) (ssbA) [Mammaliicoccus vitulinus strain Dog047]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTCACCTTAGCTATCAATCGTACTTTTACGAATTCGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGCCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCTAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAACCAATCAAATAACCAAAATAATAACGAGTTCCAGAATTATGGACAAGACT
TTGGCGGTAATCAGCAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATAATCAACAATCAAGTAACCCATTT
GCGAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.57

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

53.889

100

0.551
  ssb Glaesserella parasuis strain SC1401

33.166

100

0.375