Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U27_RS11690 Genome accession   NZ_CP120107
Coordinates   2510300..2510806 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain Dog106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2505300..2515806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U27_RS11660 (P3U27_11660) - 2505462..2507453 (+) 1992 WP_101485007.1 catalase -
  P3U27_RS11665 (P3U27_11665) - 2507667..2508428 (-) 762 WP_323694513.1 Abi family protein -
  P3U27_RS11670 (P3U27_11670) - 2508397..2508756 (-) 360 WP_228064226.1 hypothetical protein -
  P3U27_RS11675 (P3U27_11675) - 2509039..2509281 (-) 243 WP_323695897.1 DUF3923 family protein -
  P3U27_RS11680 (P3U27_11680) - 2509442..2509965 (+) 524 Protein_2279 ABC transporter transmembrane domain-containing protein -
  P3U27_RS11685 (P3U27_11685) rpsR 2510004..2510246 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  P3U27_RS11690 (P3U27_11690) ssbA 2510300..2510806 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  P3U27_RS11695 (P3U27_11695) rpsF 2510829..2511125 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  P3U27_RS11700 (P3U27_11700) sbi 2511462..2512958 (+) 1497 WP_065520724.1 Ig-binding surface protein Sbi/SpsK -
  P3U27_RS11705 (P3U27_11705) - 2513012..2513821 (-) 810 WP_140241061.1 ABC transporter permease subunit -
  P3U27_RS11710 (P3U27_11710) - 2513814..2514749 (-) 936 WP_323695898.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=803019 P3U27_RS11690 WP_014614920.1 2510300..2510806(-) (ssbA) [Staphylococcus pseudintermedius strain Dog106]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=803019 P3U27_RS11690 WP_014614920.1 2510300..2510806(-) (ssbA) [Staphylococcus pseudintermedius strain Dog106]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACTTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381