Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3T86_RS08640 Genome accession   NZ_CP120099
Coordinates   1806288..1807160 (-) Length   290 a.a.
NCBI ID   WP_323702000.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain Dog109     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1801288..1812160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T86_RS08625 (P3T86_08625) xerC 1801552..1802442 (-) 891 WP_096810092.1 tyrosine recombinase XerC -
  P3T86_RS08630 (P3T86_08630) trmFO 1802562..1803869 (-) 1308 WP_096810094.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3T86_RS08635 (P3T86_08635) topA 1804025..1806091 (-) 2067 WP_115342207.1 type I DNA topoisomerase -
  P3T86_RS08640 (P3T86_08640) dprA 1806288..1807160 (-) 873 WP_323702000.1 DNA-processing protein DprA Machinery gene
  P3T86_RS08645 (P3T86_08645) sucD 1807481..1808389 (-) 909 WP_096810099.1 succinate--CoA ligase subunit alpha -
  P3T86_RS08650 (P3T86_08650) sucC 1808411..1809577 (-) 1167 WP_096810101.1 ADP-forming succinate--CoA ligase subunit beta -
  P3T86_RS08655 (P3T86_08655) - 1809685..1810455 (-) 771 WP_096810103.1 ribonuclease HII -
  P3T86_RS08660 (P3T86_08660) ylqF 1810465..1811325 (-) 861 WP_096810105.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33160.36 Da        Isoelectric Point: 9.8686

>NTDB_id=802947 P3T86_RS08640 WP_323702000.1 1806288..1807160(-) (dprA) [Staphylococcus nepalensis strain Dog109]
MDINHLYLKLRFAGMTTRQIHQLFNYECDFDSYNKREQQYKLKSYLTKIKSTKKMSIYDNFIKHDIESILLQLDRWEVKF
IGIKNTAYPNLLREIFEPPLILFYKGNLSLAQNAQSLAVVGSRQATSYTNEALRILFPSFKKRNLTIVSGLAEGADKLAH
QHALAHHMPAIAVLGFGHLNHYPKTTYVIRKQLEQKGLVVSEYLPYQKPLKHHFPERNRIISGLSKGVLITESTINSGTS
ITTNCALDQNREVYVLPGSIFNKMTMGNLISAQEGAKIVISAKDIIEDYH

Nucleotide


Download         Length: 873 bp        

>NTDB_id=802947 P3T86_RS08640 WP_323702000.1 1806288..1807160(-) (dprA) [Staphylococcus nepalensis strain Dog109]
ATGGACATTAATCATCTATACTTAAAGTTACGCTTTGCAGGAATGACAACGAGACAAATACATCAATTATTTAATTATGA
ATGTGATTTTGACTCTTATAATAAGAGAGAACAGCAGTATAAGTTGAAATCGTATTTAACTAAAATTAAATCAACGAAAA
AAATGAGTATATATGATAATTTTATTAAGCATGATATCGAATCTATTTTATTACAATTAGATAGGTGGGAAGTAAAATTC
ATCGGAATCAAAAACACTGCGTATCCAAATTTACTCCGTGAAATATTTGAGCCTCCCCTTATACTTTTTTATAAAGGAAA
CCTATCATTGGCACAAAATGCACAAAGTCTTGCGGTTGTTGGTTCTAGGCAAGCTACAAGTTATACAAACGAGGCCTTAA
GGATTCTTTTTCCTTCATTTAAAAAGAGAAATTTAACAATTGTTTCTGGCTTGGCAGAAGGCGCAGATAAATTAGCACAT
CAACACGCTTTAGCGCACCATATGCCTGCAATAGCAGTTTTAGGATTTGGACACTTAAACCATTATCCTAAGACAACATA
CGTTATCAGAAAGCAACTGGAGCAAAAAGGATTAGTCGTTAGCGAATACTTACCATATCAAAAACCACTCAAACATCACT
TTCCAGAAAGAAATAGAATTATTAGTGGTCTATCAAAAGGTGTTTTAATTACAGAATCGACAATCAATAGTGGAACATCT
ATAACAACAAATTGTGCATTAGATCAAAATAGAGAAGTGTATGTTTTACCAGGGTCAATATTTAATAAAATGACAATGGG
TAATTTAATTAGTGCGCAAGAAGGCGCCAAAATCGTAATATCTGCAAAAGATATCATAGAAGATTATCATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.53

97.586

0.493
  dprA Staphylococcus aureus N315

50.53

97.586

0.493
  dprA Lactococcus lactis subsp. cremoris KW2

35.836

100

0.362