Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U69_RS12280 Genome accession   NZ_CP120083
Coordinates   2488754..2489266 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain Dog117_H     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2481300..2490938 2488754..2489266 within 0


Gene organization within MGE regions


Location: 2481300..2490938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U69_RS12240 (P3U69_12240) tnpA 2481300..2481782 (-) 483 WP_323704760.1 IS200/IS605-like element ISSep3 family transposase -
  P3U69_RS12245 (P3U69_12245) - 2481883..2483547 (-) 1665 Protein_2371 IS1182 family transposase -
  P3U69_RS12250 (P3U69_12250) - 2483881..2485195 (+) 1315 Protein_2372 ISL3 family transposase -
  P3U69_RS12255 (P3U69_12255) - 2485324..2485572 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  P3U69_RS12260 (P3U69_12260) - 2485750..2486499 (-) 750 Protein_2374 amidohydrolase family protein -
  P3U69_RS12265 (P3U69_12265) - 2486715..2486972 (+) 258 WP_011276864.1 hypothetical protein -
  P3U69_RS12270 (P3U69_12270) - 2487175..2488245 (+) 1071 WP_011276865.1 Ltp family lipoprotein -
  P3U69_RS12275 (P3U69_12275) rpsR 2488464..2488706 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  P3U69_RS12280 (P3U69_12280) ssbA 2488754..2489266 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  P3U69_RS12285 (P3U69_12285) rpsF 2489288..2489584 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  P3U69_RS12290 (P3U69_12290) - 2489875..2490681 (+) 807 WP_011276868.1 glycoside hydrolase family 25 protein -
  P3U69_RS12295 (P3U69_12295) - 2490747..2490938 (+) 192 WP_011276869.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=802732 P3U69_RS12280 WP_011276866.1 2488754..2489266(-) (ssbA) [Staphylococcus haemolyticus strain Dog117_H]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=802732 P3U69_RS12280 WP_011276866.1 2488754..2489266(-) (ssbA) [Staphylococcus haemolyticus strain Dog117_H]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACATCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376