Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RI578_RS29535 Genome accession   NZ_CP134203
Coordinates   6454906..6457050 (+) Length   714 a.a.
NCBI ID   WP_310873912.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6449906..6462050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS29510 (RI578_29510) - 6450676..6451584 (-) 909 WP_310873907.1 pseudouridine-5'-phosphate glycosidase -
  RI578_RS29515 (RI578_29515) - 6451705..6452133 (+) 429 WP_310873908.1 VOC family protein -
  RI578_RS29520 (RI578_29520) - 6452162..6452716 (-) 555 WP_310873909.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RI578_RS29525 (RI578_29525) - 6452797..6453696 (-) 900 WP_310873910.1 glycerophosphodiester phosphodiesterase family protein -
  RI578_RS29530 (RI578_29530) - 6453990..6454865 (+) 876 WP_310873911.1 MHYT domain-containing protein -
  RI578_RS29535 (RI578_29535) uvrB 6454906..6457050 (+) 2145 WP_310873912.1 excinuclease ABC subunit UvrB Machinery gene
  RI578_RS29540 (RI578_29540) - 6457191..6457769 (+) 579 WP_121746441.1 TerD family protein -
  RI578_RS29545 (RI578_29545) - 6457865..6459907 (+) 2043 WP_310873913.1 TerD family protein -
  RI578_RS29550 (RI578_29550) - 6460162..6461160 (+) 999 WP_310873914.1 TerC family protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80057.78 Da        Isoelectric Point: 4.8512

>NTDB_id=802702 RI578_RS29535 WP_310873912.1 6454906..6457050(+) (uvrB) [Streptomyces sp. BB1-1-1]
MRPVSQIERTVAPFEVVSPYQPNGDQPAAIAELARRVEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFARGTLRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYL
SATPGTYELSRSDGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMERAIDETNRRREKQVAFNKANGIDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRQSKDGKAAKAPVPALGG
QAAAGAKAAKGKGKVKETVPTDRPAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=802702 RI578_RS29535 WP_310873912.1 6454906..6457050(+) (uvrB) [Streptomyces sp. BB1-1-1]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAACGGCGACCAGCC
GGCGGCCATCGCCGAACTCGCCCGGCGTGTCGAAGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTCGTGATGGCGCCGAACAAGACACTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTGCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CGGCGACCAACTCGCTGCTCACCCGCCGTGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCC
CAGGAGTACGTGGACCGCATGGTCCCGCTCCGGGTCGGCGAGGAGCACGACCGGGACGAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCCTTCGCCCGCGGCACCCTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCGGTCCGCATCGAGATGTTCGGTGACGAGATCGAGGCCCTGTCCACGCTCCACCCGGTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCCGCCTCCCACTACGTCGCGGGCCCCGAGCGCCTGGAGCGGGC
CGTCAACGACATCGAGAAGGAGCTGGCGGAGCGGCTGACCGAGCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACGACGTACGACCTCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCCATGCAC
TTCGACGGCCGCCTGCCCGGCTCCCCGCCGAACACCCTGCTGGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGTCCACTGAAGTGGGAGGAGTTCCAGGGACGCATCGGACAGACCGTGTACCTG
TCGGCGACCCCGGGCACCTACGAGCTCTCCCGCTCGGACGGCGCCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGGACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAACTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAACTCCTGCGTGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCCGCGAGGGCCTCGACCTGCCGGAGGTCTCCCTGGTGGCGATCCTAGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACGCCGGCGATGGAGAGGGCGATCGACGAGACCAACCGCCGCCGCGAGAAGCAGGTCGCGTTCAACAA
GGCGAACGGCATCGACCCTCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACATCGACA
CCGAGCAGCTGCTCGGCTCGGGCTACCGCCAGTCGAAGGACGGCAAGGCCGCCAAGGCCCCCGTGCCCGCCCTCGGCGGC
CAGGCGGCGGCCGGCGCCAAGGCGGCCAAGGGCAAGGGCAAGGTCAAGGAAACCGTGCCGACCGACCGCCCCGCGGCGGA
GCTCGCCGAACAGATCGAGGACCTCACCACCCGTATGCGGGCGGCCGCCGCGGACCTGCAGTTCGAGATCGCGGCCCGGC
TCCGGGACGAGGTCTCCGAGATGAAGAAGGAGCTGCGTCAGATGAAGGAGGCCGGTCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(670-703)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

Type III restriction enzyme, res subunit (ResIII)

(22-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

56.377

96.639

0.545
  uvrB Streptococcus pneumoniae TIGR4

56.377

96.639

0.545
  uvrB Streptococcus pneumoniae D39

56.377

96.639

0.545