Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   RI578_RS27170 Genome accession   NZ_CP134203
Coordinates   5936721..5937869 (+) Length   382 a.a.
NCBI ID   WP_399061535.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5931721..5942869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS27160 (RI578_27160) - 5933100..5934365 (+) 1266 WP_310873518.1 FAD-dependent oxidoreductase -
  RI578_RS27165 (RI578_27165) dnaG 5934530..5936464 (+) 1935 WP_310873519.1 DNA primase -
  RI578_RS27170 (RI578_27170) rpoS 5936721..5937869 (+) 1149 WP_399061535.1 RNA polymerase sigma factor Regulator
  RI578_RS27175 (RI578_27175) - 5937894..5938139 (-) 246 WP_310873520.1 hypothetical protein -
  RI578_RS27180 (RI578_27180) rcrQ 5938173..5940101 (-) 1929 WP_310873521.1 ABC transporter ATP-binding protein Regulator
  RI578_RS27185 (RI578_27185) rcrP 5940101..5941834 (-) 1734 WP_310873522.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42548.27 Da        Isoelectric Point: 5.1521

>NTDB_id=802696 RI578_RS27170 WP_399061535.1 5936721..5937869(+) (rpoS) [Streptomyces sp. BB1-1-1]
MQTQTLTQTDTSTDGAEPDAESGVLVAMPPQHRAVHHPENRPEEPPAAEDAPEAAEHPAAPADAPEPDGPPPPTRTETGG
PSSDLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLRLAVDLDSRLALDLDRLVVMGRLAKRRLIEANLRLVVSV
AKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRM
LQERGYEPTPQDVAAHLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLDAVLST
LGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=802696 RI578_RS27170 WP_399061535.1 5936721..5937869(+) (rpoS) [Streptomyces sp. BB1-1-1]
GTGCAGACCCAGACCCTCACCCAGACCGACACCAGTACCGACGGCGCGGAGCCGGACGCGGAGAGCGGCGTCCTCGTCGC
TATGCCCCCGCAGCACCGCGCCGTGCACCACCCCGAGAACCGGCCGGAGGAGCCGCCCGCGGCGGAGGACGCCCCCGAAG
CGGCCGAGCACCCCGCCGCCCCCGCCGACGCCCCCGAGCCGGACGGACCGCCGCCGCCCACCCGTACGGAGACCGGCGGG
CCCTCCTCCGACCTGTTCCGGCAGTACCTGCGGGAGATCGGCCGGATTCCGCTGCTCACCGCGGCCGAGGAGGTCGACCT
CGCCCGGCGCGTGGAGGCCGGGCTGTTCGCCGAGGAGAAGCTGCGGCTCGCCGTCGACCTGGACAGCCGGCTCGCCCTGG
ACCTCGACCGGCTCGTCGTCATGGGCCGCCTGGCCAAGCGGCGCCTGATCGAGGCGAACCTGCGGCTCGTGGTGTCGGTG
GCGAAGCGGTACGTCGGGCGCGGGCTGACCATGCTGGACCTGGTCCAGGAGGGGAACCTGGGGCTGATCCGGGCCGTGGA
GAAGTTCGACTACGCCCGCGGCTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGCCAGGCCATGTCCCGGGCGCTGG
CCGACCAGGCGCGCACCATCCGCGTCCCCGTCCACGTCGTGGAACTCATCAACCGGGTCGTCCGCGTCCAGCGGCGCATG
CTCCAGGAACGCGGCTACGAGCCGACCCCGCAGGACGTCGCCGCCCACCTGGACCTGGCCCCCGAGCGGGTCGGGGAGGT
GCTGCGCCTCGCCCAGGAGCCGGTCTCCCTGCACGCCCCGGTCGGCGAGGAGGACGACGTCGCCCTCGGCGACCTGATAG
AGGACGGCGACGCCGCCAGCCCCGTCGAGTCGGCCGCGTTCCTGCTGCTGCGCGAGCACCTGGACGCGGTGCTCTCCACC
CTCGGCGAGCGCGAGCGCAAGGTCGTCCAGCTCCGCTACGGCCTGGTCGACGGCCGCCCCCGCACGCTGGAGGAGATAGG
CCGCATCTTCGGGGTCACCCGCGAGCGGATCCGCCAGATCGAGTCCAAGACGCTCAACAAGCTCCGGGACCACGCCTACG
CGGACCAGCTGCGCGGGTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(84-117)

Sigma-70, region 4 (Sigma70_r4)

(317-369)

Sigma-70 region 2 (Sigma70_r2)

(149-218)

Sigma-70 region 3 (Sigma70_r3)

(228-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.936

89.529

0.366