Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U77_RS11815 Genome accession   NZ_CP120082
Coordinates   2497369..2497875 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain Dog117_P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2492369..2502875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U77_RS11800 (P3U77_11800) - 2493586..2495577 (+) 1992 WP_096636731.1 catalase -
  P3U77_RS11805 (P3U77_11805) - 2495791..2496882 (-) 1092 WP_096636732.1 Abi family protein -
  P3U77_RS11810 (P3U77_11810) rpsR 2497073..2497315 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  P3U77_RS11815 (P3U77_11815) ssbA 2497369..2497875 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  P3U77_RS11820 (P3U77_11820) rpsF 2497898..2498194 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  P3U77_RS11825 (P3U77_11825) sbi 2498531..2500018 (+) 1488 WP_130921238.1 Ig-binding surface protein Sbi/SpsK -
  P3U77_RS11830 (P3U77_11830) - 2500072..2500881 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  P3U77_RS11835 (P3U77_11835) - 2500874..2501809 (-) 936 WP_096636734.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=802697 P3U77_RS11815 WP_014614920.1 2497369..2497875(-) (ssbA) [Staphylococcus pseudintermedius strain Dog117_P]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=802697 P3U77_RS11815 WP_014614920.1 2497369..2497875(-) (ssbA) [Staphylococcus pseudintermedius strain Dog117_P]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381