Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RI578_RS27180 Genome accession   NZ_CP134203
Coordinates   5938173..5940101 (-) Length   642 a.a.
NCBI ID   WP_310873521.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5933173..5945101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS27165 (RI578_27165) dnaG 5934530..5936464 (+) 1935 WP_310873519.1 DNA primase -
  RI578_RS27170 (RI578_27170) rpoS 5936721..5937869 (+) 1149 WP_399061535.1 RNA polymerase sigma factor Regulator
  RI578_RS27175 (RI578_27175) - 5937894..5938139 (-) 246 WP_310873520.1 hypothetical protein -
  RI578_RS27180 (RI578_27180) rcrQ 5938173..5940101 (-) 1929 WP_310873521.1 ABC transporter ATP-binding protein Regulator
  RI578_RS27185 (RI578_27185) rcrP 5940101..5941834 (-) 1734 WP_310873522.1 ABC transporter ATP-binding protein Regulator
  RI578_RS27190 (RI578_27190) - 5941973..5943427 (-) 1455 WP_310873523.1 FGGY family carbohydrate kinase -
  RI578_RS27195 (RI578_27195) - 5943501..5943806 (-) 306 WP_121746894.1 YtxH domain-containing protein -
  RI578_RS27215 (RI578_27215) - 5944452..5944904 (-) 453 WP_310873524.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69469.96 Da        Isoelectric Point: 6.1479

>NTDB_id=802697 RI578_RS27180 WP_310873521.1 5938173..5940101(-) (rcrQ) [Streptomyces sp. BB1-1-1]
MAGPAGRMMAGGGPDQRSMDLKGSGKRLVARFRPERVVLCTLLACLVVSVGLSVIGPKILGRATDLIFAGIVGRDMPSGA
TKQQVLDSMRERGDGDVADMLRSTDFTPGQGIDFGAVGEVLLLALAVFAVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSYVVATRVGK
RSQPQFVQQWRSTGRLNAHIEEMYTGHALVKVFGRQEQSAKQFAEENDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGARPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDVAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADVILVMENGSIIEQGTHGELLAAGGGYARLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=802697 RI578_RS27180 WP_310873521.1 5938173..5940101(-) (rcrQ) [Streptomyces sp. BB1-1-1]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGTCCCGACCAGCGTTCGATGGACCTCAAGGGGTCGGGCAAGCG
GCTCGTCGCCCGGTTCCGGCCGGAGCGGGTGGTCCTCTGCACGCTGCTGGCGTGCCTGGTCGTCAGCGTCGGTCTCAGCG
TGATCGGGCCGAAGATCCTCGGCAGGGCCACCGACCTGATCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGGGCC
ACGAAGCAACAGGTCCTGGACTCCATGCGCGAGCGCGGCGACGGCGATGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGGTGCCGTGGGTGAGGTGCTGCTGCTCGCGCTGGCGGTGTTCGCCGTCGCCGGGTTGC
TGATGGCGGTGGCCACGCGGCTGGTGAACCGCGCGGTCAACCGGACCATGTTCCGGATGCGGGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCCAGCAGACGCTGCAGCAGTCCATGGGCCAGCTGATCAACTCGCTGCTGACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTACGTGGTGGCCACGCGTGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGACGGCTGAACGCGCACATCGAGGAGATGTACACCGGACA
CGCCCTCGTGAAGGTGTTCGGGCGCCAGGAGCAGTCGGCGAAGCAGTTCGCCGAGGAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTCGTCGCG
GTGGTGGGCGGCCTGCGGGTCGCCTCGGGCTCCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGGGTGGCGTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGAGCCCGGCCCGAGGACCTGCGCGGGCGGGTGGAGCTGGAG
CACGTGTCCTTCCGCTACGACCCGGAGAAGCCCCTGATCGAGGACCTGTCCCTGAAGGTGGAGCCGGGGCACACGGTCGC
CATCGTCGGACCCACGGGCGCCGGGAAGACCACCCTCGTCAATCTGCTGATGCGGTTCTACGAGGTATCCGGCGGGCGGA
TCACCCTGGACGGCGTGGACGTGGCGAAGATGTCCAGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGCGGAAGGTGACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCCACGTCGTCCGTGGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCCAAGCTGGCGCACGGGCGGACGTCCTT
CGTGATCGCGCACCGGCTGTCGACGATCCGCGACGCCGACGTGATCTTGGTGATGGAGAATGGGTCCATCATCGAGCAGG
GCACGCACGGCGAGCTGCTGGCGGCCGGCGGCGGGTACGCGCGCCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.256

92.523

0.391