Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RI578_RS27185 Genome accession   NZ_CP134203
Coordinates   5940101..5941834 (-) Length   577 a.a.
NCBI ID   WP_310873522.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5935101..5946834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS27170 (RI578_27170) rpoS 5936721..5937869 (+) 1149 WP_399061535.1 RNA polymerase sigma factor Regulator
  RI578_RS27175 (RI578_27175) - 5937894..5938139 (-) 246 WP_310873520.1 hypothetical protein -
  RI578_RS27180 (RI578_27180) rcrQ 5938173..5940101 (-) 1929 WP_310873521.1 ABC transporter ATP-binding protein Regulator
  RI578_RS27185 (RI578_27185) rcrP 5940101..5941834 (-) 1734 WP_310873522.1 ABC transporter ATP-binding protein Regulator
  RI578_RS27190 (RI578_27190) - 5941973..5943427 (-) 1455 WP_310873523.1 FGGY family carbohydrate kinase -
  RI578_RS27195 (RI578_27195) - 5943501..5943806 (-) 306 WP_121746894.1 YtxH domain-containing protein -
  RI578_RS27215 (RI578_27215) - 5944452..5944904 (-) 453 WP_310873524.1 hypothetical protein -
  RI578_RS27220 (RI578_27220) - 5944989..5945702 (-) 714 WP_310873525.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62525.64 Da        Isoelectric Point: 5.7928

>NTDB_id=802698 RI578_RS27185 WP_310873522.1 5940101..5941834(-) (rcrP) [Streptomyces sp. BB1-1-1]
MLIRLLRTCLRPYRKPIALLVALQFLQTCASLYLPTLNADIIDEGVVKGDSGYILSYGALMIGISLAQVVCNIGAVYYGA
RTAAAVGRDVRGAVFDRVQSFSAREVGGFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LVAVVPVLAICVTLIVRRLRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANADLTEVALGSGNLLAL
MFPVVMTVVNVSSVAVVWFGAHRIESGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVTELRRHGHLELRGAGFRYPGAEEPVLRHIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TVDPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDASDEELWHALGVAQAKEFVERLEGGLDAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAELGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGVGRHQELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=802698 RI578_RS27185 WP_310873522.1 5940101..5941834(-) (rcrP) [Streptomyces sp. BB1-1-1]
GTGCTCATACGACTCCTGCGGACCTGTCTCAGGCCCTACCGAAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACGAAGGGGTCGTGAAGGGGGACTCCGGTTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTCGTGTGCAACATCGGTGCCGTCTACTACGGTGCG
CGAACCGCGGCCGCGGTCGGCCGGGACGTGCGGGGCGCGGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CGGCTTCGGCGCTCCCTCGCTGATCACCCGGACGACGAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTCGTCGCGGTGGTGCCGGTGCTGGCGATCTGCGTGACCCTCATCGTGCGGCGGCTGCGCCCGCTGTTCCGGGCCATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACGCGGACCTGACCGAGGTGGCGCTGGGTTCCGGCAACCTGCTCGCGCTG
ATGTTCCCCGTGGTCATGACGGTGGTGAACGTGTCGTCGGTCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGAGAGCGG
CGGGATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGGGACCGAGAGCAGTGTGGTGCCT
CCCGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGCTCCGGGGGGCCGGTTTCCGCTACCCCGGTGCCGA
GGAGCCGGTGCTCCGGCACATCGACCTGGTGGCCCGGCCGGGCGAGACGACCGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTCCCCCGGCTGTTCGACGCCACGGACGGCGAGGTGCTGGTCGACGGGGTGGACGTACGG
ACCGTCGATCCGAAGCTACTGGCCAGGACCGTGGGGCTGGTGCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTCGCCAC
CAATCTGCGCTACGGCAATCCGGACGCCAGCGACGAGGAGCTGTGGCACGCGCTGGGGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTGGAGGGCGGGCTCGACGCGCCGGTCTCGCAGGGCGGCACGAACGTGTCGGGCGGCCAGCGGCAGCGGCTC
GCCATCGCCCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCGCTCCGTGCCGAGCTGGGCCGGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCATCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCCGGCACCAGGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.254

97.574

0.383