Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RI578_RS18865 Genome accession   NZ_CP134203
Coordinates   4122386..4123072 (-) Length   228 a.a.
NCBI ID   WP_210963164.1    Uniprot ID   A0ABP9T9A1
Organism   Streptomyces sp. BB1-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4117386..4128072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS18845 (RI578_18845) - 4118823..4119005 (+) 183 WP_310872158.1 hypothetical protein -
  RI578_RS18850 (RI578_18850) - 4118988..4120211 (-) 1224 WP_310872159.1 cytochrome P450 -
  RI578_RS18855 (RI578_18855) vraR 4120265..4120939 (-) 675 WP_310872160.1 response regulator transcription factor Regulator
  RI578_RS18860 (RI578_18860) - 4120936..4122282 (-) 1347 WP_310872161.1 histidine kinase -
  RI578_RS18865 (RI578_18865) vraR 4122386..4123072 (-) 687 WP_210963164.1 response regulator transcription factor Regulator
  RI578_RS18870 (RI578_18870) - 4123127..4124494 (-) 1368 WP_310872162.1 sensor histidine kinase -
  RI578_RS18875 (RI578_18875) - 4124487..4125812 (-) 1326 WP_310872163.1 acyltransferase -
  RI578_RS18880 (RI578_18880) - 4125805..4126809 (-) 1005 WP_310872164.1 alpha/beta hydrolase -
  RI578_RS18885 (RI578_18885) - 4126995..4127951 (-) 957 WP_310872165.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24561.26 Da        Isoelectric Point: 4.8384

>NTDB_id=802679 RI578_RS18865 WP_210963164.1 4122386..4123072(-) (vraR) [Streptomyces sp. BB1-1-1]
MTTSSNGRVIRVLIADDQQMVRQGFTVLLNTQPDIEVIGQAVDGLDAVAKVAELAPDVVLMDIRMPELGGIEATRRITGA
TASIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVADGDALLAPGITRRLIAEFARLDDRPRGPLKARV
GELTERETEVLALIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=802679 RI578_RS18865 WP_210963164.1 4122386..4123072(-) (vraR) [Streptomyces sp. BB1-1-1]
ATGACGACCAGCAGCAACGGCCGCGTGATCCGCGTGCTGATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGT
GCTGCTCAACACCCAGCCCGACATCGAGGTGATCGGGCAGGCGGTGGACGGCCTGGACGCCGTGGCCAAGGTCGCCGAGC
TGGCTCCGGACGTCGTCCTGATGGACATCCGCATGCCCGAGCTGGGCGGCATCGAGGCCACCCGCCGCATCACCGGGGCG
ACCGCGTCGATCAGAGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGGGCCGGCGCGTC
CGGGTTCCTGCTGAAGGACGCCTCCGCCGACCAGCTCGCCGAGGCGGTCAGGGTGGTGGCGGACGGCGACGCGCTGCTCG
CGCCGGGCATCACCCGGCGGCTGATCGCCGAGTTCGCCCGGCTCGACGACCGGCCGCGCGGCCCGCTGAAGGCCCGCGTC
GGTGAGCTGACCGAGCGGGAGACCGAGGTGCTGGCCCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCCAGCGACT
GGTGGTCGCCGAGCAGACGGTGAAGACCCATGTGGGCCGGATCCTGGTGAAGCTGGGCCTCCGGGACCGGACGCAGGCGG
CGGTGTTCGCCTACGAGTCGGGGCTGGTACGGCCGTCGGGGTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-217)

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.519

94.737

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

40.359

97.807

0.395