Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RIU97_RS30105 Genome accession   NZ_CP134201
Coordinates   6556599..6558752 (+) Length   717 a.a.
NCBI ID   WP_404960743.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6551599..6563752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS30080 (RIU97_30000) - 6552126..6552911 (+) 786 WP_404960738.1 class I SAM-dependent methyltransferase -
  RIU97_RS30085 (RIU97_30005) - 6552978..6553346 (+) 369 WP_404960739.1 cupin domain-containing protein -
  RIU97_RS30090 (RIU97_30010) - 6553353..6554648 (-) 1296 WP_404960740.1 MFS transporter -
  RIU97_RS30095 (RIU97_30015) - 6554805..6555368 (-) 564 WP_404960741.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RIU97_RS30100 (RIU97_30020) - 6555457..6556365 (-) 909 WP_404960742.1 glycerophosphodiester phosphodiesterase -
  RIU97_RS30105 (RIU97_30025) uvrB 6556599..6558752 (+) 2154 WP_404960743.1 excinuclease ABC subunit UvrB Machinery gene
  RIU97_RS30110 (RIU97_30030) - 6558841..6559419 (+) 579 WP_030762430.1 TerD family protein -
  RIU97_RS30115 (RIU97_30035) - 6559476..6561503 (+) 2028 WP_404960744.1 TerD family protein -
  RIU97_RS30120 (RIU97_30040) - 6561742..6562725 (+) 984 WP_404960745.1 TerC family protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80444.49 Da        Isoelectric Point: 4.9012

>NTDB_id=802512 RIU97_RS30105 WP_404960743.1 6556599..6558752(+) (uvrB) [Streptomyces sp. 147326]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIADLEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVSLKVGEETDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAITGIEAELAERLAELEKQGKMLEAQRLRMRTTYDLEMMRQIGSCSGIENYSLH
MDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRQRVEKDERILVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKMTPAMEKAIDETNRRREKQIAYNTANGIDPQPLRKKINDIVATIAREELDTEELLGTGYRQAKDGKGAKAPVPALGG
RAAQKAGGKGAKGAKAAKGAEVLTDRPAEELAALIEQMTERMRGAAAELQFEVAARIRDEVGELKKELRQMKEAGLA

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=802512 RIU97_RS30105 WP_404960743.1 6556599..6558752(+) (uvrB) [Streptomyces sp. 147326]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGACCTGGAGAAGCGCATCCGTGCAGGTGAGAAGGATGTCGTCCTGCTGGGTGCGACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTTCAGCGCCCCACCCTGGTCATGGCGCCGAACAAGACGCTCGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTACCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCCACCAACTCGCTGCTGACCCGGCGCGACGTGATCGTCGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTCGACCGGATGGTCTCCCTCAAGGTCGGCGAGGAGACCGACCGGGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCCTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCGCTGACCGGC
GAGGTCATCAGCGAGGACCGCGAGCTGTACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCCGAGCGCATGGAGAAGGC
GATCACCGGCATCGAGGCCGAGCTCGCCGAGCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCGCAGCGGC
TGCGCATGCGCACCACGTACGACCTGGAGATGATGCGGCAGATCGGGTCCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATGGACGACCGCGAGCGCGGCTCCGCCCCGAACACCCTCATCGACTACTTCCCGGAGGACTTCCTCCTGGTCATCGACGA
GTCGCACGTGACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCCGCCCTCGACAACCGGCCGCTGAAGTGGGAGGAGTTCCAGAAGCGCATCGGCCAGACCGTCTACCTG
TCGGCGACCCCCGGAAAGTACGAGCTCTCGCGCGGCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTCATCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTCCACGAGATCCGGCAGCGGGTGGAGAAGGACG
AGCGGATCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTGGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGGGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGTTCCGGGACCTCCCTGATCCAGACCATCGGACGCGCGGCGCGCAACGTATCGGGCCAGGTCCACATGTAC
GCGGACAAGATGACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGGCGCCGGGAGAAGCAGATCGCCTACAACAC
GGCGAACGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCCACGATCGCCCGCGAGGAACTCGACA
CCGAAGAGCTCCTCGGCACCGGATACCGGCAGGCGAAGGACGGCAAGGGAGCCAAGGCTCCGGTGCCGGCGCTCGGCGGC
CGGGCCGCCCAGAAGGCGGGCGGCAAGGGCGCGAAGGGGGCCAAGGCCGCCAAGGGCGCCGAGGTGCTCACCGACCGGCC
CGCCGAGGAGCTGGCCGCGCTCATCGAGCAGATGACCGAGCGCATGCGCGGGGCGGCCGCGGAGCTGCAGTTCGAGGTCG
CGGCCCGCATCCGGGACGAGGTGGGCGAGCTGAAGAAGGAGTTGCGGCAGATGAAGGAAGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Type III restriction enzyme, res subunit (ResIII)

(25-145)

UvrB interaction domain (UvrB_inter)

(168-257)

UvrB/uvrC motif (UVR)

(674-707)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.897

97.071

0.552
  uvrB Streptococcus pneumoniae R6

56.897

97.071

0.552
  uvrB Streptococcus pneumoniae D39

56.897

97.071

0.552