Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU97_RS18775 Genome accession   NZ_CP134201
Coordinates   4185068..4185727 (+) Length   219 a.a.
NCBI ID   WP_404958236.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4180068..4190727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS18755 (RIU97_18715) - 4180420..4181619 (+) 1200 WP_404958228.1 acyltransferase -
  RIU97_RS18760 (RIU97_18720) - 4181630..4182964 (+) 1335 WP_404958230.1 sensor histidine kinase -
  RIU97_RS18765 (RIU97_18725) vraR 4182961..4183632 (+) 672 WP_404958232.1 response regulator Regulator
  RIU97_RS18770 (RIU97_18730) - 4183740..4185071 (+) 1332 WP_404958234.1 sensor histidine kinase -
  RIU97_RS18775 (RIU97_18735) vraR 4185068..4185727 (+) 660 WP_404958236.1 response regulator Regulator
  RIU97_RS18780 (RIU97_18740) - 4185781..4186989 (+) 1209 WP_404958238.1 cytochrome P450 -
  RIU97_RS18785 (RIU97_18745) - 4187044..4187562 (-) 519 WP_404958240.1 hypothetical protein -
  RIU97_RS18790 (RIU97_18750) - 4187559..4188410 (-) 852 WP_404962876.1 diacylglycerol kinase -
  RIU97_RS18795 (RIU97_18755) - 4188593..4189876 (+) 1284 WP_404958242.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23554.35 Da        Isoelectric Point: 4.6414

>NTDB_id=802487 RIU97_RS18775 WP_404958236.1 4185068..4185727(+) (vraR) [Streptomyces sp. 147326]
MTIRVLIVDDQMMVREGFSVLLNAMDGIEVVGEAVDGREAIAQVAALRPDVVLMDIRMPLMNGLEATREIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLIAEFSKISETRKLADPAGVGELTERE
TEVLVLIAQGLSNAEIAAHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=802487 RIU97_RS18775 WP_404958236.1 4185068..4185727(+) (vraR) [Streptomyces sp. 147326]
ATGACGATCAGAGTGCTGATCGTCGACGATCAGATGATGGTGCGGGAAGGGTTCTCCGTCCTGCTGAACGCCATGGACGG
CATCGAGGTGGTGGGCGAGGCGGTCGACGGCCGGGAGGCCATCGCGCAGGTGGCGGCGTTGCGGCCGGACGTGGTGCTGA
TGGACATCCGGATGCCGCTGATGAACGGTCTGGAGGCGACGCGGGAGATCGTCGCCGCGGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGGGCCGGGGCCTCCGGGTTCCTGCTCAAGGACGC
GTCGGCCCGTCAGCTGGCGGACGGGGTGCGCGTGGTGGCGGCCGGGGAGGCCCTCCTGGCGCCTTCGGTGACCAAGCGGC
TGATCGCGGAGTTCTCGAAGATCTCCGAGACGCGCAAGCTCGCGGATCCGGCGGGAGTGGGTGAGCTGACGGAGCGGGAG
ACGGAGGTGCTCGTGCTGATCGCTCAGGGGCTGTCCAATGCGGAGATAGCGGCCCACCTGATCGTCGCGGAGTCCACGAT
CAAGACCCATGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGCGACCGCACGCAGGCCGCGGTGTTCGCCTACGAGACCC
GGCTGGTGACACCGGCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

98.63

0.447
  degU Bacillus subtilis subsp. subtilis str. 168

40.807

100

0.416