Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U43_RS13745 Genome accession   NZ_CP120062
Coordinates   2789534..2790067 (-) Length   177 a.a.
NCBI ID   WP_320420745.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain Dog127_L     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2784534..2795067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U43_RS13715 (P3U43_13715) - 2785183..2785533 (+) 351 WP_201270642.1 hypothetical protein -
  P3U43_RS13720 (P3U43_13720) coaA 2785614..2786516 (+) 903 WP_016999210.1 type I pantothenate kinase -
  P3U43_RS13725 (P3U43_13725) - 2786756..2787229 (+) 474 WP_064204288.1 pyrimidine dimer DNA glycosylase/endonuclease V -
  P3U43_RS13730 (P3U43_13730) - 2787283..2787663 (+) 381 WP_257504258.1 YbgA family protein -
  P3U43_RS13735 (P3U43_13735) - 2788098..2788997 (+) 900 WP_320420742.1 Abi family protein -
  P3U43_RS13740 (P3U43_13740) rpsR 2789237..2789479 (-) 243 WP_016999205.1 30S ribosomal protein S18 -
  P3U43_RS13745 (P3U43_13745) ssbA 2789534..2790067 (-) 534 WP_320420745.1 single-stranded DNA-binding protein Machinery gene
  P3U43_RS13750 (P3U43_13750) rpsF 2790098..2790391 (-) 294 WP_016999203.1 30S ribosomal protein S6 -
  P3U43_RS13755 (P3U43_13755) ychF 2790510..2791610 (-) 1101 WP_016999202.1 redox-regulated ATPase YchF -
  P3U43_RS13760 (P3U43_13760) - 2791612..2791809 (-) 198 WP_016999201.1 DUF951 domain-containing protein -
  P3U43_RS13765 (P3U43_13765) - 2791833..2792717 (-) 885 WP_016999200.1 mechanosensitive ion channel family protein -
  P3U43_RS13770 (P3U43_13770) - 2792730..2793563 (-) 834 WP_016999199.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19841.57 Da        Isoelectric Point: 4.9532

>NTDB_id=802441 P3U43_RS13745 WP_320420745.1 2789534..2790067(-) (ssbA) [Mammaliicoccus lentus strain Dog127_L]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQLYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=802441 P3U43_RS13745 WP_320420745.1 2789534..2790067(-) (ssbA) [Mammaliicoccus lentus strain Dog127_L]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATTATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCA
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.538

100

0.633
  ssb Latilactobacillus sakei subsp. sakei 23K

55.056

100

0.554
  ssb Vibrio cholerae strain A1552

35.359

100

0.362