Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P3U43_RS13745 | Genome accession | NZ_CP120062 |
| Coordinates | 2789534..2790067 (-) | Length | 177 a.a. |
| NCBI ID | WP_320420745.1 | Uniprot ID | - |
| Organism | Mammaliicoccus lentus strain Dog127_L | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2732838..2790185 | 2789534..2790067 | within | 0 |
Gene organization within MGE regions
Location: 2732838..2790185
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3U43_RS13445 (P3U43_13445) | - | 2733826..2734278 (+) | 453 | WP_016999240.1 | GNAT family N-acetyltransferase | - |
| P3U43_RS13450 (P3U43_13450) | - | 2734286..2734600 (-) | 315 | WP_320420668.1 | multidrug efflux SMR transporter | - |
| P3U43_RS13455 (P3U43_13455) | - | 2734602..2734925 (-) | 324 | WP_016999238.1 | multidrug efflux SMR transporter | - |
| P3U43_RS13460 (P3U43_13460) | - | 2735204..2735545 (+) | 342 | WP_320420669.1 | helix-turn-helix transcriptional regulator | - |
| P3U43_RS13465 (P3U43_13465) | - | 2735661..2736452 (-) | 792 | WP_135031824.1 | DUF4097 family beta strand repeat-containing protein | - |
| P3U43_RS13470 (P3U43_13470) | - | 2736449..2737009 (-) | 561 | WP_016999235.1 | HAAS signaling domain-containing protein | - |
| P3U43_RS13475 (P3U43_13475) | - | 2737002..2737325 (-) | 324 | WP_016999234.1 | PadR family transcriptional regulator | - |
| P3U43_RS13480 (P3U43_13480) | - | 2737555..2737917 (-) | 363 | WP_135031826.1 | hypothetical protein | - |
| P3U43_RS13485 (P3U43_13485) | - | 2737933..2738904 (-) | 972 | WP_135031828.1 | VOC family protein | - |
| P3U43_RS13490 (P3U43_13490) | - | 2738941..2739522 (+) | 582 | WP_135031832.1 | alpha/beta hydrolase | - |
| P3U43_RS13495 (P3U43_13495) | - | 2739542..2740789 (-) | 1248 | WP_064204276.1 | MFS transporter | - |
| P3U43_RS13500 (P3U43_13500) | - | 2740789..2741364 (-) | 576 | WP_016999229.1 | helix-turn-helix domain-containing protein | - |
| P3U43_RS13505 (P3U43_13505) | - | 2741606..2743219 (+) | 1614 | WP_135031836.1 | BCCT family transporter | - |
| P3U43_RS13510 (P3U43_13510) | - | 2743352..2743885 (+) | 534 | WP_070044842.1 | hypothetical protein | - |
| P3U43_RS13515 (P3U43_13515) | - | 2743954..2744592 (-) | 639 | WP_135031838.1 | hypothetical protein | - |
| P3U43_RS13520 (P3U43_13520) | - | 2744934..2746160 (+) | 1227 | WP_064204280.1 | hypothetical protein | - |
| P3U43_RS13525 (P3U43_13525) | - | 2746230..2746820 (-) | 591 | WP_016999224.1 | type 1 glutamine amidotransferase family protein | - |
| P3U43_RS13530 (P3U43_13530) | - | 2747100..2748206 (+) | 1107 | WP_320420670.1 | Gfo/Idh/MocA family oxidoreductase | - |
| P3U43_RS13535 (P3U43_13535) | - | 2748593..2748907 (+) | 315 | WP_000421280.1 | YdcP family protein | - |
| P3U43_RS13540 (P3U43_13540) | - | 2748928..2749305 (+) | 378 | WP_001234189.1 | YdcP family protein | - |
| P3U43_RS13545 (P3U43_13545) | - | 2749315..2750088 (+) | 774 | WP_000185760.1 | hypothetical protein | - |
| P3U43_RS13550 (P3U43_13550) | - | 2750110..2751513 (+) | 1404 | WP_001130247.1 | FtsK/SpoIIIE domain-containing protein | - |
| P3U43_RS13555 (P3U43_13555) | mobT | 2751695..2752879 (+) | 1185 | WP_000426691.1 | MobT family relaxase | - |
| P3U43_RS13560 (P3U43_13560) | - | 2752876..2753148 (+) | 273 | WP_000055367.1 | hypothetical protein | - |
| P3U43_RS13565 (P3U43_13565) | - | 2753145..2753366 (+) | 222 | WP_001009054.1 | hypothetical protein | - |
| P3U43_RS13570 (P3U43_13570) | - | 2753408..2754187 (+) | 780 | WP_000678782.1 | abortive infection family protein | - |
| P3U43_RS13575 (P3U43_13575) | - | 2754249..2754749 (+) | 501 | WP_000421245.1 | antirestriction protein ArdA | - |
| P3U43_RS13580 (P3U43_13580) | - | 2754912..2756078 (+) | 1167 | WP_000195404.1 | IS256 family transposase | - |
| P3U43_RS13585 (P3U43_13585) | - | 2756157..2757182 (+) | 1026 | WP_000234705.1 | hypothetical protein | - |
| P3U43_RS13590 (P3U43_13590) | - | 2757253..2757648 (+) | 396 | WP_000723886.1 | conjugal transfer protein | - |
| P3U43_RS13595 (P3U43_13595) | - | 2757632..2760085 (+) | 2454 | WP_000941001.1 | ATP-binding protein | - |
| P3U43_RS13600 (P3U43_13600) | - | 2760082..2762109 (+) | 2028 | WP_000192390.1 | CD3337/EF1877 family mobilome membrane protein | - |
| P3U43_RS13605 (P3U43_13605) | - | 2762106..2763128 (+) | 1023 | WP_000768374.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| P3U43_RS13610 (P3U43_13610) | - | 2763145..2764074 (+) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| P3U43_RS13615 (P3U43_13615) | - | 2764316..2764432 (+) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| P3U43_RS13620 (P3U43_13620) | tet(M) | 2764448..2766367 (+) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| P3U43_RS13625 (P3U43_13625) | - | 2766465..2766653 (+) | 189 | WP_032506803.1 | cysteine-rich KTR domain-containing protein | - |
| P3U43_RS13630 (P3U43_13630) | - | 2766711..2767064 (-) | 354 | WP_001227349.1 | helix-turn-helix transcriptional regulator | - |
| P3U43_RS13635 (P3U43_13635) | - | 2767596..2768018 (+) | 423 | WP_000804878.1 | RNA polymerase sigma factor | - |
| P3U43_RS13640 (P3U43_13640) | - | 2768015..2768245 (+) | 231 | WP_000845144.1 | helix-turn-helix domain-containing protein | - |
| P3U43_RS13645 (P3U43_13645) | - | 2768741..2768941 (+) | 201 | WP_000633909.1 | DUF3173 domain-containing protein | - |
| P3U43_RS13650 (P3U43_13650) | - | 2768968..2770161 (+) | 1194 | WP_000237798.1 | site-specific integrase | - |
| P3U43_RS13655 (P3U43_13655) | guaA | 2770229..2771773 (-) | 1545 | WP_320420723.1 | glutamine-hydrolyzing GMP synthase | - |
| P3U43_RS13660 (P3U43_13660) | guaB | 2771793..2773262 (-) | 1470 | WP_016999221.1 | IMP dehydrogenase | - |
| P3U43_RS13665 (P3U43_13665) | - | 2773297..2774565 (-) | 1269 | WP_064204283.1 | nucleobase:cation symporter-2 family protein | - |
| P3U43_RS13670 (P3U43_13670) | xpt | 2774567..2775142 (-) | 576 | WP_016999220.1 | xanthine phosphoribosyltransferase | - |
| P3U43_RS13675 (P3U43_13675) | - | 2775609..2776949 (+) | 1341 | WP_064204284.1 | YsnF/AvaK domain-containing protein | - |
| P3U43_RS13680 (P3U43_13680) | - | 2777098..2777754 (+) | 657 | WP_016999218.1 | GNAT family N-acetyltransferase | - |
| P3U43_RS13685 (P3U43_13685) | - | 2777928..2778965 (-) | 1038 | WP_218707045.1 | nitronate monooxygenase family protein | - |
| P3U43_RS13690 (P3U43_13690) | - | 2779061..2779720 (+) | 660 | WP_070044836.1 | nitroreductase family protein | - |
| P3U43_RS13695 (P3U43_13695) | - | 2779942..2781282 (+) | 1341 | WP_016999215.1 | sodium-dependent transporter | - |
| P3U43_RS13700 (P3U43_13700) | - | 2781410..2782927 (-) | 1518 | WP_016999214.1 | DASS family sodium-coupled anion symporter | - |
| P3U43_RS13705 (P3U43_13705) | - | 2783130..2784005 (+) | 876 | WP_064204286.1 | hypothetical protein | - |
| P3U43_RS13710 (P3U43_13710) | - | 2784186..2784998 (+) | 813 | WP_016999212.1 | hypothetical protein | - |
| P3U43_RS13715 (P3U43_13715) | - | 2785183..2785533 (+) | 351 | WP_201270642.1 | hypothetical protein | - |
| P3U43_RS13720 (P3U43_13720) | coaA | 2785614..2786516 (+) | 903 | WP_016999210.1 | type I pantothenate kinase | - |
| P3U43_RS13725 (P3U43_13725) | - | 2786756..2787229 (+) | 474 | WP_064204288.1 | pyrimidine dimer DNA glycosylase/endonuclease V | - |
| P3U43_RS13730 (P3U43_13730) | - | 2787283..2787663 (+) | 381 | WP_257504258.1 | YbgA family protein | - |
| P3U43_RS13735 (P3U43_13735) | - | 2788098..2788997 (+) | 900 | WP_320420742.1 | Abi family protein | - |
| P3U43_RS13740 (P3U43_13740) | rpsR | 2789237..2789479 (-) | 243 | WP_016999205.1 | 30S ribosomal protein S18 | - |
| P3U43_RS13745 (P3U43_13745) | ssbA | 2789534..2790067 (-) | 534 | WP_320420745.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19841.57 Da Isoelectric Point: 4.9532
>NTDB_id=802441 P3U43_RS13745 WP_320420745.1 2789534..2790067(-) (ssbA) [Mammaliicoccus lentus strain Dog127_L]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQLYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQLYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF
Nucleotide
Download Length: 534 bp
>NTDB_id=802441 P3U43_RS13745 WP_320420745.1 2789534..2790067(-) (ssbA) [Mammaliicoccus lentus strain Dog127_L]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATTATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCA
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATTATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCA
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.538 |
100 |
0.633 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.056 |
100 |
0.554 |
| ssb | Vibrio cholerae strain A1552 |
35.359 |
100 |
0.362 |