Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3U36_RS08495 Genome accession   NZ_CP120056
Coordinates   1758487..1759374 (-) Length   295 a.a.
NCBI ID   WP_115895497.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog129     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1753487..1764374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U36_RS08480 (P3U36_08480) xerC 1753991..1754902 (-) 912 WP_015729043.1 tyrosine recombinase XerC -
  P3U36_RS08485 (P3U36_08485) trmFO 1755002..1756306 (-) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3U36_RS08490 (P3U36_08490) topA 1756334..1758403 (-) 2070 WP_014614088.1 type I DNA topoisomerase -
  P3U36_RS08495 (P3U36_08495) dprA 1758487..1759374 (-) 888 WP_115895497.1 DNA-processing protein DprA Machinery gene
  P3U36_RS08500 (P3U36_08500) sucD 1759613..1760518 (-) 906 WP_115895496.1 succinate--CoA ligase subunit alpha -
  P3U36_RS08505 (P3U36_08505) sucC 1760540..1761706 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  P3U36_RS08510 (P3U36_08510) - 1761973..1762248 (-) 276 WP_015729039.1 hypothetical protein -
  P3U36_RS08515 (P3U36_08515) - 1762340..1763125 (-) 786 WP_037543184.1 ribonuclease HII -
  P3U36_RS08520 (P3U36_08520) ylqF 1763118..1763990 (-) 873 WP_322214436.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33511.05 Da        Isoelectric Point: 8.3645

>NTDB_id=802325 P3U36_RS08495 WP_115895497.1 1758487..1759374(-) (dprA) [Staphylococcus pseudintermedius strain Dog129]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLCEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=802325 P3U36_RS08495 WP_115895497.1 1758487..1759374(-) (dprA) [Staphylococcus pseudintermedius strain Dog129]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTATGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.345

98.305

0.495
  dprA Staphylococcus aureus N315

50

98.305

0.492