Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q2K21_RS01160 Genome accession   NZ_CP134053
Coordinates   272648..273322 (+) Length   224 a.a.
NCBI ID   WP_310763170.1    Uniprot ID   A0ABV7SA20
Organism   Streptomyces sp. CGMCC 4.7035     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 267648..278322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2K21_RS01145 (Q2K21_01145) - 268777..269874 (+) 1098 WP_310763167.1 alpha/beta hydrolase -
  Q2K21_RS01150 (Q2K21_01150) - 269867..271096 (+) 1230 WP_310763168.1 acyltransferase -
  Q2K21_RS01155 (Q2K21_01155) - 271107..272651 (+) 1545 WP_386275935.1 sensor histidine kinase -
  Q2K21_RS01160 (Q2K21_01160) vraR 272648..273322 (+) 675 WP_310763170.1 response regulator transcription factor Regulator
  Q2K21_RS01165 (Q2K21_01165) - 273498..274844 (+) 1347 WP_310763171.1 histidine kinase -
  Q2K21_RS01170 (Q2K21_01170) vraR 274841..275515 (+) 675 WP_310763172.1 response regulator transcription factor Regulator
  Q2K21_RS01175 (Q2K21_01175) - 275586..276806 (+) 1221 WP_310763173.1 cytochrome P450 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24202.87 Da        Isoelectric Point: 4.7374

>NTDB_id=801970 Q2K21_RS01160 WP_310763170.1 272648..273322(+) (vraR) [Streptomyces sp. CGMCC 4.7035]
MTSSTIRVLIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGKDAIAKVAELAPDVVLMDIRMPELGGIEATRRITEDTPHP
RVLVLTTFDLDEYVYDALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDSTPRAPLKVRVGDLT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=801970 Q2K21_RS01160 WP_310763170.1 272648..273322(+) (vraR) [Streptomyces sp. CGMCC 4.7035]
ATGACGAGCAGCACCATCCGCGTACTGATCGCCGACGACCAGATGATGGTCCGGCAGGGCTTCACGGTGCTGCTCAACGC
CCAGCCCGACATCGAGGTCGTCGGTCAGGCCGTCGACGGGAAGGACGCGATCGCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTCCTGATGGACATCCGCATGCCCGAGCTGGGCGGCATCGAGGCGACCCGCCGCATCACCGAGGACACCCCGCACCCC
AGGGTCCTGGTGCTCACCACCTTCGACCTCGACGAGTACGTGTACGACGCCCTGCGCGCCGGCGCCTCCGGCTTCCTGCT
GAAGGACGCCTCCGCCGACCAGCTAGCCGAAGCCGTACGGGTGGTGGCGGCGGGCGACGCGCTCCTCGCGCCCGGGATCA
CCCGGCGTCTGATCGCCGAGTTCTCCCGTCTGGACAGCACCCCCCGGGCCCCGCTCAAGGTACGCGTCGGCGACCTCACC
GAGCGCGAGACGGAGGTCCTCGCCCTCATCGCCCAGGGCCTGTCGAACGCGGAGATCGCCGAACGCCTCGTCGTGGCCGA
GCAGACCGTGAAGACCCATGTGGGCCGCATCCTGGTGAAGCTGGGGCTGCGCGACCGCACCCAGGCGGCGGTGTTCGCCT
ACGAGTCGGGGCTGGTGCGGCCGTCGGGGTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.833

96.429

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

41.485

100

0.424