Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RE424_RS08795 Genome accession   NZ_CP134047
Coordinates   1776611..1777213 (-) Length   200 a.a.
NCBI ID   WP_023914739.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1771611..1782213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS08775 yajC 1773107..1773367 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  RE424_RS08780 tgt 1773386..1774525 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  RE424_RS08785 queA 1774548..1775573 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RE424_RS08790 ruvB 1775575..1776579 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RE424_RS08795 ruvA 1776611..1777213 (-) 603 WP_023914739.1 Holliday junction branch migration protein RuvA Machinery gene
  RE424_RS08800 - 1777227..1777682 (-) 456 WP_000368902.1 ACT domain-containing protein -
  RE424_RS08805 obgE 1777695..1778987 (-) 1293 WP_000496100.1 GTPase ObgE -
  RE424_RS08810 rpmA 1779871..1780155 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  RE424_RS08815 - 1780167..1780487 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  RE424_RS08820 rplU 1780493..1780801 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  RE424_RS08825 mreD 1781163..1781692 (-) 530 Protein_1729 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22276.48 Da        Isoelectric Point: 6.0240

>NTDB_id=801940 RE424_RS08795 WP_023914739.1 1776611..1777213(-) (ruvA) [Staphylococcus aureus strain 21SAU_AGRO3]
MYAYVKGKLTHLYPTHVVIETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=801940 RE424_RS08795 WP_023914739.1 1776611..1777213(-) (ruvA) [Staphylococcus aureus strain 21SAU_AGRO3]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTATTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43