Detailed information NTG0801872

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: P3U39_RS04640
• Genome accession: NZ_CP120027
• Coordinates: 993492..993953 (+)
• Length: 153 a.a.
• NCBI ID: WP_201308677.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain Dog143
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 988492..998953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3U39_RS04605 (P3U39_04605)	-	988655..988864 (+)	210	WP_096548967.1	hypothetical protein	-
P3U39_RS04610 (P3U39_04610)	-	988879..989055 (+)	177	WP_165479882.1	hypothetical protein	-
P3U39_RS04615 (P3U39_04615)	-	989057..989371 (+)	315	WP_131112721.1	DUF2482 family protein	-
P3U39_RS04620 (P3U39_04620)	-	989451..989708 (+)	258	WP_037542870.1	DUF1108 family protein	-
P3U39_RS04625 (P3U39_04625)	-	989724..991670 (+)	1947	WP_131112720.1	AAA family ATPase	-
P3U39_RS12630	-	991709..991864 (+)	156	WP_410254262.1	helix-turn-helix domain-containing protein	-
P3U39_RS04630 (P3U39_04630)	-	991878..992792 (+)	915	WP_201308676.1	RecT family recombinase	-
P3U39_RS04635 (P3U39_04635)	-	992855..993499 (+)	645	WP_015729213.1	MBL fold metallo-hydrolase	-
P3U39_RS04640 (P3U39_04640)	ssbA	993492..993953 (+)	462	WP_201308677.1	single-stranded DNA-binding protein	Machinery gene
P3U39_RS04645 (P3U39_04645)	-	993968..994375 (+)	408	WP_015729211.1	hypothetical protein	-
P3U39_RS04650 (P3U39_04650)	-	994391..995110 (+)	720	WP_201308678.1	hypothetical protein	-
P3U39_RS04655 (P3U39_04655)	-	995159..995926 (+)	768	WP_201308679.1	DnaD domain-containing protein	-
P3U39_RS04660 (P3U39_04660)	-	995941..996723 (+)	783	WP_323697271.1	ATP-binding protein	-
P3U39_RS12635	-	996720..996887 (+)	168	WP_410254260.1	hypothetical protein	-
P3U39_RS04665 (P3U39_04665)	-	996887..997093 (+)	207	WP_015729207.1	hypothetical protein	-
P3U39_RS04670 (P3U39_04670)	-	997240..997491 (+)	252	WP_096636856.1	hypothetical protein	-
P3U39_RS04675 (P3U39_04675)	-	997524..997718 (+)	195	WP_051144748.1	SAV1978 family virulence-associated passenger protein	-
P3U39_RS04680 (P3U39_04680)	-	997724..997927 (+)	204	WP_201308681.1	hypothetical protein	-
P3U39_RS04685 (P3U39_04685)	-	997906..998160 (+)	255	WP_201308682.1	hypothetical protein	-
P3U39_RS04690 (P3U39_04690)	-	998180..998470 (+)	291	WP_201308683.1	hypothetical protein	-
P3U39_RS04695 (P3U39_04695)	-	998504..998737 (+)	234	WP_201308684.1	hypothetical protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 16854.77 Da
• Isoelectric Point: 6.7120

>NTDB_id=801872 P3U39_RS04640 WP_201308677.1 993492..993953(+) (ssbA) [Staphylococcus pseudintermedius strain Dog143]
MINRVVLVGRLTKNPELRHTPNGIIVSSFTLAVNRTFTNAKGEREADFINCIAFKKTAENINNYLSKGSLAGIDGHLQSR
SYENKEGQRVYVTEVICESVQFLESKSTNSNQSQGGIASGQYQPKANHVAATSQNPFVNMNDSIDISDDDLPF

Nucleotide

• Length: 462 bp

>NTDB_id=801872 P3U39_RS04640 WP_201308677.1 993492..993953(+) (ssbA) [Staphylococcus pseudintermedius strain Dog143]
ATGATTAATAGAGTTGTACTTGTAGGTCGATTAACTAAAAATCCTGAATTAAGACATACACCAAATGGAATAATTGTTAG
CAGTTTCACACTCGCTGTAAATCGTACATTTACGAATGCAAAAGGTGAACGTGAAGCGGATTTTATTAACTGTATTGCCT
TTAAAAAAACAGCAGAGAACATTAATAACTACTTATCAAAAGGAAGTTTAGCAGGTATTGATGGTCACTTACAATCACGT
AGTTATGAAAATAAAGAGGGACAACGCGTATATGTCACTGAAGTAATTTGTGAAAGTGTTCAGTTTCTTGAAAGCAAATC
TACTAATAGCAATCAATCACAAGGCGGTATAGCATCCGGACAATATCAACCAAAAGCAAATCATGTCGCTGCTACAAGTC
AAAATCCATTTGTTAATATGAATGATTCAATTGATATTAGTGACGACGATTTACCATTCTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	54.07	100	0.608
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.601
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.547	69.281	0.399