Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   P0S91_RS13830 Genome accession   NZ_CP119968
Coordinates   2896871..2897236 (-) Length   121 a.a.
NCBI ID   WP_015187576.1    Uniprot ID   K9XAL6
Organism   Gloeocapsopsis dulcis strain AAB1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2891871..2902236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0S91_RS13815 (P0S91_13775) - 2892688..2893539 (-) 852 WP_105221274.1 Hpt domain-containing protein -
  P0S91_RS13820 (P0S91_13780) - 2893688..2896300 (-) 2613 WP_105221273.1 methyl-accepting chemotaxis protein -
  P0S91_RS13825 (P0S91_13785) - 2896325..2896861 (-) 537 WP_105221272.1 chemotaxis protein CheW -
  P0S91_RS13830 (P0S91_13790) pilH 2896871..2897236 (-) 366 WP_015187576.1 response regulator transcription factor Machinery gene
  P0S91_RS13835 (P0S91_13795) hmpF 2897843..2899549 (+) 1707 WP_105221271.1 pilus motility taxis protein HmpF -
  P0S91_RS13840 (P0S91_13800) tilS 2899575..2900573 (-) 999 WP_105221270.1 tRNA lysidine(34) synthetase TilS -
  P0S91_RS13845 (P0S91_13805) ccsB 2900606..2901643 (-) 1038 WP_105221269.1 c-type cytochrome biogenesis protein CcsB -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13544.76 Da        Isoelectric Point: 6.4514

>NTDB_id=801282 P0S91_RS13830 WP_015187576.1 2896871..2897236(-) (pilH) [Gloeocapsopsis dulcis strain AAB1]
MATVLVVEDSPTQREIIIQLLQKSGLQVTVAHDGVEALEQIQVSCPSIVVLDVVMPRMNGYELCRKLKTDPKTQNVRVIM
CSTKGEEFDRHWGMKQGADAYIVKPFQSNEFLGTVKQLLQG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=801282 P0S91_RS13830 WP_015187576.1 2896871..2897236(-) (pilH) [Gloeocapsopsis dulcis strain AAB1]
ATGGCAACAGTTCTAGTTGTGGAAGATAGCCCCACACAAAGAGAAATTATTATACAACTCTTACAAAAAAGTGGTTTACA
AGTTACTGTAGCCCATGATGGAGTTGAAGCTTTAGAGCAGATTCAAGTATCCTGTCCATCAATCGTAGTACTTGATGTTG
TCATGCCAAGAATGAATGGTTATGAACTTTGCCGTAAGTTAAAAACTGATCCAAAAACTCAAAATGTTCGAGTTATTATG
TGTTCGACAAAAGGTGAAGAATTTGACCGTCATTGGGGCATGAAACAAGGTGCTGATGCATATATTGTTAAACCTTTTCA
ATCAAATGAATTTTTAGGAACAGTTAAACAACTATTGCAAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9XAL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

67.5

99.174

0.669
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  micA Streptococcus pneumoniae Cp1015

37.5

99.174

0.372