Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P3G59_RS21165 Genome accession   NZ_CP119967
Coordinates   4750944..4753178 (-) Length   744 a.a.
NCBI ID   WP_277758836.1    Uniprot ID   -
Organism   Pseudomonas sp. A34-9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4745944..4758178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G59_RS21130 murB 4746324..4747343 (-) 1020 WP_277758833.1 UDP-N-acetylmuramate dehydrogenase -
  P3G59_RS21135 - 4747340..4747804 (-) 465 WP_102900035.1 low molecular weight protein-tyrosine-phosphatase -
  P3G59_RS21140 kdsB 4747804..4748568 (-) 765 WP_277758834.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P3G59_RS21145 - 4748565..4748750 (-) 186 WP_003174668.1 Trm112 family protein -
  P3G59_RS21150 lpxK 4748772..4749782 (-) 1011 WP_277758835.1 tetraacyldisaccharide 4'-kinase -
  P3G59_RS21155 - 4749782..4750210 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  P3G59_RS21160 exbB 4750207..4750842 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P3G59_RS21165 comA 4750944..4753178 (-) 2235 WP_277758836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3G59_RS21170 - 4753315..4753833 (+) 519 WP_277758837.1 DUF2062 domain-containing protein -
  P3G59_RS21175 - 4753987..4754766 (-) 780 WP_008087860.1 ABC transporter permease -
  P3G59_RS21180 - 4754763..4755695 (-) 933 WP_277758838.1 ABC transporter ATP-binding protein -
  P3G59_RS21185 - 4755829..4756452 (-) 624 WP_277758839.1 glutathione S-transferase -
  P3G59_RS21190 - 4756496..4757155 (-) 660 WP_277758840.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81935.36 Da        Isoelectric Point: 10.3791

>NTDB_id=801250 P3G59_RS21165 WP_277758836.1 4750944..4753178(-) (comA) [Pseudomonas sp. A34-9]
MRTGMMALAVGLLVAVFMPALPPVWLMLLLPVAALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPVGLDGETRWVEG
RVVGLPQNSDGVVRFELADAHSRHEKLPALMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPHAFDYEAWLLAQRVGATG
TIKDGQRLTAARWAWRDSIRQRLLNVDAQGRNGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYWL
VAGLARFGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNAVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLMALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFLALAVIAGQWPAWTAPSVPGWVWLFGSLGAVLLLLPRGVPLRPLGWPLLLLLV
VPPRERLDAGLADIWQLDVGQGLAILIRTRHHALLYDAGPRFGDFDLGERVVLPALRKLSVEKLDQMLLSHADADHAGGA
LAIMRGLTVAHVISGDPAALPAQLGAEACESGRQWQWDGVRFELWQWVDARDSNQRSCVLQIEANGERLLLTGDIDTHAE
RLLLDSPLAVPTHWLQSPHHGSRSSSSMALLKVLKPESVLISRGHGNSFGHPHPTVLARYHKLGLRIYDSAEQGAIHLQL
GTFKAPRTMRHQRRFWRDPPALAR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=801250 P3G59_RS21165 WP_277758836.1 4750944..4753178(-) (comA) [Pseudomonas sp. A34-9]
ATGCGCACAGGGATGATGGCGCTCGCAGTCGGTCTGCTGGTCGCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTGGCGGCTTTGATGCTGCTGCCGTTTCGCAGCTATCCCTTGGCGTTTTTGCTGTTTGGCTTCACGT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGTTTGCCGGTCGGGCTGGATGGCGAAACCCGCTGGGTTGAAGGG
CGGGTCGTCGGCTTGCCGCAGAACAGCGACGGCGTGGTGCGCTTCGAATTGGCCGATGCGCACTCACGGCACGAAAAACT
GCCGGCGCTGATGCGACTCGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGTTGGCGATTAGCGGTCAAGCTCA
AGCGCCCGGGTGGTTTGCTCAATCCGCACGCTTTCGATTACGAAGCGTGGCTGTTGGCGCAACGCGTCGGCGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGACCGCCGCGCGCTGGGCCTGGCGCGACAGCATTCGCCAGCGTTTGCTGAATGTGGA
TGCGCAGGGGCGAAATGGCGCATTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGCTCAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGCCAGCACATTGGTTTGCTGGCGGCGGTGATGTATTGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCTTTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTCGCGGC
GGCATTGGGTTATGGCCTGCTTGCCGGGTTCGATGTGCCGGTGCGGCGGGCCTGCGTGATGGTCGCGCTGGTGCTGTTAT
GGCGTCTGCGTTTTCGCCATCTCGGCGCCTGGTGGCCGTTGTTGCTGGCGTTCAATGCCGTGCTTTTGCTCGACCCCTTG
GCGAGCCTGCGCCCAGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGGTGCTGATCTTCACATTTGGCGGTCGGCTGGGCGC
GTGGCGCTGGTGGCAAACCTGGACGCGGGCGCAGTGGTTGATTGCCATCGGTCTGTGCCCGGTGTTAATGGCACTGAATC
TGCCGATCAGTCTTAGCGGGCCATTGGCCAACCTGTTGGCGGTGCCTTGGGTGAGTCTCGTGGTGTTGCCACCGGCATTG
CTCGGAACGTTGCTGTTGCCGGTGCCGTATGTCGGTGAAGGCCTTTTGTGGCTGGCCGGCGGTTTGATTGATCTGCTGTT
TCTCGCGTTGGCCGTGATTGCCGGGCAGTGGCCGGCATGGACTGCCCCCTCTGTGCCGGGCTGGGTCTGGTTGTTCGGCA
GCCTCGGCGCTGTGTTGTTGCTGTTGCCGCGCGGTGTGCCCCTGCGGCCACTGGGCTGGCCATTGTTGTTGCTACTAGTG
GTGCCACCACGCGAACGGCTGGATGCAGGCCTGGCCGATATCTGGCAGCTCGATGTCGGCCAAGGCCTGGCCATTTTGAT
TCGTACCCGCCATCACGCGTTGCTCTATGACGCGGGGCCACGCTTTGGCGATTTCGATCTCGGCGAACGGGTGGTGCTGC
CCGCGTTGCGCAAGCTCAGTGTGGAAAAACTCGATCAGATGCTGCTGAGCCATGCGGACGCCGATCACGCGGGTGGCGCT
CTGGCGATCATGCGCGGTTTGACCGTCGCTCATGTGATCAGCGGTGATCCGGCGGCGCTGCCCGCGCAATTGGGCGCCGA
AGCCTGCGAAAGCGGCCGACAATGGCAGTGGGACGGCGTGCGTTTTGAGCTCTGGCAGTGGGTGGATGCTCGCGACAGCA
ATCAGCGTTCGTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGCTGACCGGCGATATCGACACCCACGCCGAA
CGCTTGCTGCTCGACAGTCCACTGGCTGTGCCGACGCACTGGCTGCAGTCGCCCCATCACGGCAGCCGCAGTTCATCGTC
TATGGCGCTGCTCAAGGTCTTGAAGCCTGAGTCCGTGCTGATCTCGCGAGGCCATGGCAACTCTTTTGGCCATCCGCACC
CGACCGTGCTGGCGCGTTATCACAAACTGGGCCTGCGCATTTACGACAGCGCCGAGCAGGGTGCCATTCATCTGCAACTG
GGTACCTTCAAGGCGCCGCGCACGATGCGTCATCAACGGCGTTTCTGGCGTGATCCGCCCGCGCTGGCCCGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.43

96.237

0.601
  comA Ralstonia pseudosolanacearum GMI1000

33.254

100

0.376