Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P3G59_RS21160 Genome accession   NZ_CP119967
Coordinates   4750207..4750842 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. A34-9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4745207..4755842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G59_RS21125 - 4745607..4746077 (-) 471 WP_277758832.1 (2Fe-2S)-binding protein -
  P3G59_RS21130 murB 4746324..4747343 (-) 1020 WP_277758833.1 UDP-N-acetylmuramate dehydrogenase -
  P3G59_RS21135 - 4747340..4747804 (-) 465 WP_102900035.1 low molecular weight protein-tyrosine-phosphatase -
  P3G59_RS21140 kdsB 4747804..4748568 (-) 765 WP_277758834.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P3G59_RS21145 - 4748565..4748750 (-) 186 WP_003174668.1 Trm112 family protein -
  P3G59_RS21150 lpxK 4748772..4749782 (-) 1011 WP_277758835.1 tetraacyldisaccharide 4'-kinase -
  P3G59_RS21155 - 4749782..4750210 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  P3G59_RS21160 exbB 4750207..4750842 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P3G59_RS21165 comA 4750944..4753178 (-) 2235 WP_277758836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3G59_RS21170 - 4753315..4753833 (+) 519 WP_277758837.1 DUF2062 domain-containing protein -
  P3G59_RS21175 - 4753987..4754766 (-) 780 WP_008087860.1 ABC transporter permease -
  P3G59_RS21180 - 4754763..4755695 (-) 933 WP_277758838.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=801249 P3G59_RS21160 WP_007908216.1 4750207..4750842(-) (exbB) [Pseudomonas sp. A34-9]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=801249 P3G59_RS21160 WP_007908216.1 4750207..4750842(-) (exbB) [Pseudomonas sp. A34-9]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCCGCGGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGGGTGATTCACGAGCTCGAACGCTACGT
CAATGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTGGGGCTGCTCGGCACGGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCAGGTATGACCACCAACGCTTCGGTATTGGCCGGCGGTATCTCCAAAGCGCTGATCACCACGGCG
GCGGGCTTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGGTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848