Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   P3F89_RS17500 Genome accession   NZ_CP119875
Coordinates   3372289..3373002 (+) Length   237 a.a.
NCBI ID   WP_001979951.1    Uniprot ID   -
Organism   Bacillus tropicus strain T36S-23     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3367289..3378002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS17475 (P3F89_17445) - 3367942..3368661 (-) 720 WP_000818985.1 3-ketoacyl-ACP reductase -
  P3F89_RS17480 (P3F89_17450) - 3369155..3370072 (+) 918 WP_001979959.1 ATP-binding cassette domain-containing protein -
  P3F89_RS17485 (P3F89_17455) - 3370069..3370821 (+) 753 WP_001979957.1 ABC transporter permease -
  P3F89_RS17490 (P3F89_17460) - 3370834..3371565 (+) 732 WP_001979955.1 ABC transporter permease -
  P3F89_RS17495 (P3F89_17465) - 3371588..3371938 (+) 351 WP_001979953.1 YxeA family protein -
  P3F89_RS17500 (P3F89_17470) scnR 3372289..3373002 (+) 714 WP_001979951.1 response regulator transcription factor Regulator
  P3F89_RS17505 (P3F89_17475) - 3373003..3374415 (+) 1413 WP_001979949.1 sensor histidine kinase KdpD -
  P3F89_RS17510 (P3F89_17480) hitS 3374494..3375582 (-) 1089 WP_142310636.1 envelope stress sensor histidine kinase HitS -
  P3F89_RS17515 (P3F89_17485) hitR 3375579..3376256 (-) 678 WP_218962893.1 envelope stress response regulator transcription factor HitR -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26956.35 Da        Isoelectric Point: 5.7510

>NTDB_id=801217 P3F89_RS17500 WP_001979951.1 3372289..3373002(+) (scnR) [Bacillus tropicus strain T36S-23]
MENLKDKKILIVDDEHEIRIMIEKLLRKEGFFRIYTTGDCTSALSFCQTNNPDIAILDVMLPDGDGFSLLSSIRQFSTIP
VLFLSARGEDEDRLLGLGLGADDYLVKPFLPRELVLRLIAILKRVYSSSIADRLSTFKLGEQIVDLESAVVYRGQKEIPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIHLLTFRGLGYKLLVKETY

Nucleotide


Download         Length: 714 bp        

>NTDB_id=801217 P3F89_RS17500 WP_001979951.1 3372289..3373002(+) (scnR) [Bacillus tropicus strain T36S-23]
ATGGAAAATTTAAAAGACAAAAAAATATTAATTGTAGACGATGAACATGAAATCAGAATAATGATTGAAAAACTTTTAAG
AAAAGAGGGATTTTTTCGTATTTATACTACTGGTGACTGTACCTCTGCTCTATCATTTTGTCAGACAAACAATCCAGATA
TCGCGATTCTAGATGTTATGTTACCTGATGGTGACGGATTTTCATTACTGTCTTCCATTAGGCAATTTTCAACTATACCA
GTTCTTTTTCTTTCCGCGCGAGGAGAGGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACTTGGTAAA
ACCGTTTTTGCCACGTGAGTTGGTATTGCGGCTAATAGCGATTTTGAAACGTGTATACTCCTCCTCAATCGCAGATCGTC
TATCTACTTTTAAGTTAGGAGAACAAATTGTCGATCTCGAAAGTGCTGTTGTGTACAGAGGACAGAAAGAAATTCCCTTG
ACAGCAAAAGAGCATGCCATTCTTGTAAAACTCTATGAAAATCAAGGGCGAATCATTACAAATGATGCCTTATGTCAAGC
AGTTTGGGGAGATGACAGCTACGGTCTTGAAAATACATTAATGGTTCACATCAGGCGGATACGTGAAAAGATTGAGCTGG
ACCCTTCCAAACCAATCCATCTACTTACCTTCAGGGGACTAGGATATAAATTACTAGTAAAGGAGACATATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.649

97.468

0.494
  micA Streptococcus pneumoniae Cp1015

41.304

97.046

0.401
  vicR Streptococcus mutans UA159

39.827

97.468

0.388