Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P3S72_RS12380 Genome accession   NZ_CP119772
Coordinates   2677911..2680136 (+) Length   741 a.a.
NCBI ID   WP_276197551.1    Uniprot ID   -
Organism   Pseudomonas sp. D3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2672911..2685136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S72_RS12365 (P3S72_12360) - 2675171..2675899 (+) 729 WP_276197548.1 response regulator transcription factor -
  P3S72_RS12370 (P3S72_12365) - 2675886..2677256 (+) 1371 WP_276197549.1 sensor histidine kinase -
  P3S72_RS12375 (P3S72_12370) - 2677260..2677775 (-) 516 WP_276197550.1 DUF2062 domain-containing protein -
  P3S72_RS12380 (P3S72_12375) comA 2677911..2680136 (+) 2226 WP_276197551.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3S72_RS12385 (P3S72_12380) exbB 2680246..2680881 (+) 636 WP_276197552.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P3S72_RS12390 (P3S72_12385) - 2680878..2681306 (+) 429 WP_024076131.1 biopolymer transporter ExbD -
  P3S72_RS12395 (P3S72_12390) lpxK 2681306..2682316 (+) 1011 WP_276197553.1 tetraacyldisaccharide 4'-kinase -
  P3S72_RS12400 (P3S72_12395) - 2682340..2682525 (+) 186 WP_003174668.1 Trm112 family protein -
  P3S72_RS12405 (P3S72_12400) kdsB 2682522..2683286 (+) 765 WP_276197554.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P3S72_RS12410 (P3S72_12405) - 2683286..2683750 (+) 465 WP_276197555.1 low molecular weight protein-tyrosine-phosphatase -
  P3S72_RS12415 (P3S72_12410) murB 2683747..2684766 (+) 1020 WP_276197556.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80122.05 Da        Isoelectric Point: 10.6410

>NTDB_id=801112 P3S72_RS12380 WP_276197551.1 2677911..2680136(+) (comA) [Pseudomonas sp. D3]
MRTGMFALALGLLALRFLPALPPTGALLALVLVALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLRPALDGQTRWLEG
RVTGLPQQTDSGVRFELTDSRSRKARLPARIRLSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATG
SVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAALARYGCWPRTWPWLPWACGLAFSAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPL
ASLQPGFWLSFAAVAVLALTFGGRLGRWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALGGLFNALALLAAQLPAWIPAEVPVGYWLVSLIGAVLLLLPKGVPFRLLGWPMLLLAV
FPPREPVPHGQVDVLQLDVGQGQALILRTRHHTLLYDAGPRSGAADLGARVVLPSLKKLGIDALEMMLLSHADADHAGGA
AAVASGLPIKRVVGGETEGLPAFLHTQPCISGEQWVWDGVSFELWQWPDAISSNPKSCVLQVQANGERLLLTGDIDRAAE
KAFLASALAVPTDWLQAPHHGSRSSSSGPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGSQVYDSAEQGAVRLRL
GTFAPPIVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=801112 P3S72_RS12380 WP_276197551.1 2677911..2680136(+) (comA) [Pseudomonas sp. D3]
ATGAGGACAGGGATGTTTGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGCCTACCGGGGCGCT
GTTGGCCCTGGTGCTGGTGGCGTTGATGCTGCTGCCGTTTCGTACTTACCCGCTGGCGTTTTTCCTATTCGGCTTGAGCT
GGGCGTGCATGAGCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGGCGCTCGACGGCCAGACACGTTGGCTGGAGGGG
CGCGTGACCGGGTTGCCGCAGCAGACCGACAGCGGCGTGCGTTTCGAACTGACCGACAGCCGGTCGCGCAAAGCCCGGCT
GCCCGCGCGGATTCGGCTGTCCTGGCACGGTGGGCCACCGGTACGCAGCGGTGAACGCTGGCGCCTCGCGGTGACGCTTA
AACGTCCGTCGGGCTTGCTCAACTTCCATGGCGTTGACCATGAAGCCTGGCTGCTGGCCCAACGTATTGGCGCCACCGGC
TCGGTGAAGGACGGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGA
TGCCCAAGGGCGCGAGGCAGGACTGGCGGCCCTGGTGCTGGGGGACGGATCGGGGCTGGCGGCCGAGGACTGGCGTGTCT
TGCAGGACACCGGCACGGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGCCTGTTGGCGGGGTTGATCTACGCGCTC
GTCGCCGCTCTGGCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTTAGCGC
AGCGCTGGGGTACGGCCTGCTGGCGGGATTCGGCGTGCCGGTGCAGCGCGCCTGTGTGATGGTGGGGCTGGTGTTGCTGT
GGCGTTTGCGTTTCCGTCATTTGGGCATCTGGTGGCCACTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAACCCTTG
GCCAGCTTGCAGCCGGGTTTCTGGCTGTCCTTTGCGGCGGTGGCGGTGCTGGCGCTGACTTTCGGTGGGCGATTGGGGCG
GTGGAGCGTCTGGCAGGCATGGACCCGTCCGCAATGGTTGATTGCCATCGGTCTTTTCCCGGTGTTGCTGGTGCTCGGTT
TGCCCATCAGTCTCAGCGCGCCGCTGGCCAATCTATTCGCGGTGCCGTGGATCAGTCTGGTGGTGTTGCCCCTAGCTTTA
CTAGGGACTGCACTGCTGGCGCTGCCGTTCGTGGGCGAGGGCTTGTTATGGCTGGCGGGTGGGGCGCTGGGCGGCTTGTT
CAACGCCCTGGCGCTACTGGCGGCGCAATTACCTGCGTGGATACCGGCCGAGGTACCCGTGGGGTATTGGCTGGTAAGCC
TGATCGGTGCGGTGTTGCTGCTGCTGCCCAAGGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGCTGTTGTTGGCAGTG
TTCCCGCCGCGCGAGCCGGTGCCCCACGGGCAGGTGGATGTGTTGCAGTTGGATGTCGGGCAAGGGCAGGCATTGATCCT
GCGCACCCGCCATCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGCCGATCTCGGCGCGCGGGTGGTGTTGC
CGTCGCTGAAGAAACTCGGAATAGACGCTTTGGAGATGATGTTATTGAGCCATGCCGATGCCGATCATGCCGGCGGTGCG
GCAGCTGTCGCCAGCGGGCTGCCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGTTTCTTCACACTCA
GCCTTGTATCAGCGGTGAGCAGTGGGTGTGGGATGGTGTGTCATTTGAACTTTGGCAATGGCCCGACGCCATTAGCAGCA
ACCCGAAGTCCTGTGTATTGCAGGTGCAGGCCAATGGCGAACGCCTGCTGCTCACTGGCGATATCGATCGTGCCGCTGAG
AAGGCGTTTCTGGCCTCGGCCCTGGCGGTGCCGACCGATTGGCTGCAAGCACCTCACCACGGTAGCCGCAGCTCTTCATC
CGGGCCCTTTCTGCAGCGGCTGGCGCCGAAATCGGTGCTGATTTCCCGAGGGCGTGGCAATGCGTTCGGCCATCCTCATC
CGCAGGTGGTGGAACGCTATCAAGCATTGGGTAGTCAGGTGTATGACAGCGCCGAACAGGGTGCGGTGCGTTTGCGATTA
GGGACCTTCGCGCCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-677)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.944

97.031

0.582
  comA Ralstonia pseudosolanacearum GMI1000

35.332

100

0.374