Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P3S72_RS12385 Genome accession   NZ_CP119772
Coordinates   2680246..2680881 (+) Length   211 a.a.
NCBI ID   WP_276197552.1    Uniprot ID   -
Organism   Pseudomonas sp. D3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2675246..2685881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S72_RS12370 (P3S72_12365) - 2675886..2677256 (+) 1371 WP_276197549.1 sensor histidine kinase -
  P3S72_RS12375 (P3S72_12370) - 2677260..2677775 (-) 516 WP_276197550.1 DUF2062 domain-containing protein -
  P3S72_RS12380 (P3S72_12375) comA 2677911..2680136 (+) 2226 WP_276197551.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3S72_RS12385 (P3S72_12380) exbB 2680246..2680881 (+) 636 WP_276197552.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P3S72_RS12390 (P3S72_12385) - 2680878..2681306 (+) 429 WP_024076131.1 biopolymer transporter ExbD -
  P3S72_RS12395 (P3S72_12390) lpxK 2681306..2682316 (+) 1011 WP_276197553.1 tetraacyldisaccharide 4'-kinase -
  P3S72_RS12400 (P3S72_12395) - 2682340..2682525 (+) 186 WP_003174668.1 Trm112 family protein -
  P3S72_RS12405 (P3S72_12400) kdsB 2682522..2683286 (+) 765 WP_276197554.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P3S72_RS12410 (P3S72_12405) - 2683286..2683750 (+) 465 WP_276197555.1 low molecular weight protein-tyrosine-phosphatase -
  P3S72_RS12415 (P3S72_12410) murB 2683747..2684766 (+) 1020 WP_276197556.1 UDP-N-acetylmuramate dehydrogenase -
  P3S72_RS12420 (P3S72_12415) - 2684840..2685511 (-) 672 WP_247404731.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22856.01 Da        Isoelectric Point: 8.0857

>NTDB_id=801113 P3S72_RS12385 WP_276197552.1 2680246..2680881(+) (exbB) [Pseudomonas sp. D3]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=801113 P3S72_RS12385 WP_276197552.1 2680246..2680881(+) (exbB) [Pseudomonas sp. D3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACGCCCGAGCATCTGCTGGGACAGGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGCAGAAACTCAAGGAACTGCGCGCCAATTCGCCCCTGGGTGAAATCCTCGCGGCCGGGTTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCGGCGCGGGTTATCCATGAGCTGGAGCGTTATAT
CAACGCCCTCGGCACTATCGCCGCCATGGCACCGTTGCTCGGTCTGCTGGGCACAGTCCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGTCGGTGCTGGCCGGTGGTATCTCGAAGGCCTTGATCACCACGGCG
GCGGGTCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGCTCGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGACGTGGACCTGGTCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858