Detailed information NTG0801106

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P3S72_RS04945
• Genome accession: NZ_CP119772
• Coordinates: 1123032..1123898 (-)
• Length: 288 a.a.
• NCBI ID: WP_276196479.1
• Uniprot ID: -
• Organism: Pseudomonas sp. D3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1118032..1128898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3S72_RS04910 (P3S72_04910)	-	1118795..1119697 (-)	903	WP_276196474.1	GntR family transcriptional regulator	-
P3S72_RS04915 (P3S72_04915)	-	1119868..1120617 (+)	750	WP_276197896.1	TIM barrel protein	-
P3S72_RS04920 (P3S72_04920)	-	1120773..1121240 (+)	468	WP_276196475.1	FAD/FMN-containing dehydrogenase	-
P3S72_RS04925 (P3S72_04925)	-	1121237..1121926 (+)	690	WP_276196476.1	energy-coupling factor ABC transporter permease	-
P3S72_RS04930 (P3S72_04930)	-	1122003..1122218 (+)	216	WP_247396658.1	hypothetical protein	-
P3S72_RS04935 (P3S72_04935)	yacG	1122215..1122415 (-)	201	WP_276196477.1	DNA gyrase inhibitor YacG	-
P3S72_RS04940 (P3S72_04940)	coaE	1122412..1123035 (-)	624	WP_276196478.1	dephospho-CoA kinase	-
P3S72_RS04945 (P3S72_04945)	pilD	1123032..1123898 (-)	867	WP_276196479.1	A24 family peptidase	Machinery gene
P3S72_RS04950 (P3S72_04950)	pilC	1123895..1125103 (-)	1209	WP_276196480.1	type II secretion system F family protein	Machinery gene
P3S72_RS04955 (P3S72_04955)	-	1125305..1125718 (+)	414	WP_276197897.1	pilin	-
P3S72_RS04960 (P3S72_04960)	-	1125754..1127163 (+)	1410	WP_276196481.1	O-antigen ligase family protein	-
P3S72_RS04970 (P3S72_04970)	-	1127412..1127717 (+)	306	WP_276196482.1	DUF6388 family protein	-
P3S72_RS04975 (P3S72_04975)	nadC	1127761..1128609 (-)	849	WP_276196483.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31900.06 Da
• Isoelectric Point: 7.9062

>NTDB_id=801106 P3S72_RS04945 WP_276196479.1 1123032..1123898(-) (pilD) [Pseudomonas sp. D3]
MNLLLSQQPWAFVVMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCTHCREAISARYPFTELACGVISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLISSLAGVC
GGLILLRRSKTQASAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=801106 P3S72_RS04945 WP_276196479.1 1123032..1123898(-) (pilD) [Pseudomonas sp. D3]
TTGAACCTGTTGCTGAGCCAGCAGCCGTGGGCCTTTGTCGTCATGGCTCTGGTGCTGGGCCTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGAATGGCGCGCACAGGCCCATGAGGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCGCACTGCAATCAGCCGATTCGGCCCTGG
GAAAACATCCCGCTGCTCAGCTACCTGATGCTCCGGGGCCGTTGTACACATTGCCGCGAAGCGATCAGTGCACGTTATCC
CTTTACTGAACTGGCGTGCGGAGTGATCTCGGCCGTGGTGGCCTGGCATTTCGGCTTTGGCTGGCAAGCCGGCGCGGTGA
TGCTATTGAGCTGGGGCTTACTGGCAATGAGCCTGATCGACGTGGACCACCAACTGCTGCCCGACGTACTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGTGTTGAGTTGCTGGTGCCCCTGCCCGACGCACTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TATTGGCGCTGCTCGGCGCCTGGGGCGGCTGGCAAATCCTGCCGATGACGTTGCTGATCTCATCGCTGGCGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGCCGGAGCAAGACCCAGGCCTCTGCGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.676	96.528	0.528
pilD	Vibrio campbellii strain DS40M4	50.179	96.875	0.486
pilD	Acinetobacter baumannii D1279779	48.905	95.139	0.465
pilD	Acinetobacter nosocomialis M2	48.54	95.139	0.462
pilD	Neisseria gonorrhoeae MS11	48.889	93.75	0.458