Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RDJ20_RS31605 Genome accession   NZ_CP133755
Coordinates   6606274..6608349 (+) Length   691 a.a.
NCBI ID   WP_196745443.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BJ86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6601274..6613349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS31575 (RDJ20_31575) - 6601697..6602077 (+) 381 WP_003096609.1 RidA family protein -
  RDJ20_RS31580 (RDJ20_31580) - 6602132..6602863 (+) 732 WP_042168748.1 hypothetical protein -
  RDJ20_RS31585 (RDJ20_31585) - 6602870..6603490 (-) 621 WP_042168752.1 LysE family translocator -
  RDJ20_RS31590 (RDJ20_31590) - 6603557..6604357 (-) 801 WP_003114367.1 AraC family transcriptional regulator -
  RDJ20_RS31595 (RDJ20_31595) - 6604357..6605208 (-) 852 WP_058178513.1 SDR family oxidoreductase -
  RDJ20_RS31600 (RDJ20_31600) oxyR 6605345..6606277 (+) 933 WP_196745442.1 oxidative stress transcriptional regulator OxyR -
  RDJ20_RS31605 (RDJ20_31605) recG 6606274..6608349 (+) 2076 WP_196745443.1 ATP-dependent DNA helicase RecG Machinery gene
  RDJ20_RS31610 (RDJ20_31610) - 6608439..6609848 (+) 1410 WP_003098324.1 HDOD domain-containing protein -
  RDJ20_RS31615 (RDJ20_31615) - 6609920..6610312 (-) 393 WP_003096629.1 hypothetical protein -
  RDJ20_RS31620 (RDJ20_31620) - 6610448..6610720 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  RDJ20_RS31625 (RDJ20_31625) alkT 6610922..6612076 (-) 1155 WP_033978488.1 rubredoxin-NAD(+) reductase AlkT -
  RDJ20_RS31630 (RDJ20_31630) - 6612128..6612295 (-) 168 WP_003098329.1 rubredoxin -
  RDJ20_RS31635 (RDJ20_31635) - 6612479..6612646 (-) 168 WP_003098330.1 rubredoxin -
  RDJ20_RS31640 (RDJ20_31640) - 6612780..6613181 (-) 402 WP_003098332.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76204.91 Da        Isoelectric Point: 7.2358

>NTDB_id=800952 RDJ20_RS31605 WP_196745443.1 6606274..6608349(+) (recG) [Pseudomonas aeruginosa strain BJ86]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYYFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=800952 RDJ20_RS31605 WP_196745443.1 6606274..6608349(+) (recG) [Pseudomonas aeruginosa strain BJ86]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTACGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACTATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGACTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCACCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTGTCCCTGCAGCGCCTGCGC
GAAGCCGTGCGCTCGCAGGCAGCGCCGCGCCTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTTCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAAATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGTGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCGCTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAACAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCAGTGAATACCGTGCTGGTGGCCGACAGCCGCCGCATCGAGGTGATCGAGCGAGTCCGCGCAGCCTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGCACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGATGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAACGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAGA
CCAGCGACGGTTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCACTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

RecG wedge domain (RecG_wedge)

(12-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.224

97.106

0.488
  recG/mmsA Streptococcus pneumoniae R6

41.654

96.237

0.401
  recG/mmsA Streptococcus pneumoniae R36A

41.654

96.237

0.401
  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394