Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3K65_RS27205 Genome accession   NZ_CP119629
Coordinates   5290706..5291227 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus paranthracis strain Bc006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5285706..5296227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K65_RS27185 (P3K65_27185) rplI 5286916..5287362 (-) 447 WP_000864231.1 50S ribosomal protein L9 -
  P3K65_RS27190 (P3K65_27190) - 5287359..5289332 (-) 1974 WP_001113899.1 DHH family phosphoesterase -
  P3K65_RS27195 (P3K65_27195) - 5289411..5290346 (-) 936 WP_001246425.1 YybS family protein -
  P3K65_RS27200 (P3K65_27200) rpsR 5290427..5290660 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  P3K65_RS27205 (P3K65_27205) ssbA 5290706..5291227 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  P3K65_RS27210 (P3K65_27210) rpsF 5291254..5291544 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  P3K65_RS27215 (P3K65_27215) ychF 5291736..5292836 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  P3K65_RS27220 (P3K65_27220) - 5292952..5293149 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  P3K65_RS27225 (P3K65_27225) - 5293170..5294051 (-) 882 WP_000382911.1 mechanosensitive ion channel family protein -
  P3K65_RS27230 (P3K65_27230) yyaC 5294311..5294907 (+) 597 WP_001020729.1 spore protease YyaC -
  P3K65_RS27235 (P3K65_27235) spo0J 5294928..5295779 (-) 852 WP_001051838.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=800152 P3K65_RS27205 WP_000981967.1 5290706..5291227(-) (ssbA) [Bacillus paranthracis strain Bc006]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=800152 P3K65_RS27205 WP_000981967.1 5290706..5291227(-) (ssbA) [Bacillus paranthracis strain Bc006]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382