Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RFN65_RS03150 Genome accession   NZ_CP133703
Coordinates   621060..623045 (+) Length   661 a.a.
NCBI ID   WP_309530049.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 616060..628045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS03135 (RFN65_03135) yvkB 617065..617634 (-) 570 WP_003244088.1 TetR/AcrR family transcriptional regulator -
  RFN65_RS03140 (RFN65_03140) fpsC 617710..620205 (-) 2496 WP_251217498.1 PEP/pyruvate-binding domain-containing protein -
  RFN65_RS03145 (RFN65_03145) csbA 620644..620874 (+) 231 WP_003228053.1 CsbA family protein -
  RFN65_RS03150 (RFN65_03150) uvrB 621060..623045 (+) 1986 WP_309530049.1 excinuclease ABC subunit UvrB Machinery gene
  RFN65_RS03155 (RFN65_03155) uvrA 623053..625926 (+) 2874 WP_116315800.1 excinuclease ABC subunit UvrA Machinery gene
  RFN65_RS03160 (RFN65_03160) hag 626265..627089 (+) 825 WP_063334737.1 flagellin Hag -
  RFN65_RS03165 (RFN65_03165) - 627288..627518 (-) 231 WP_003235419.1 hypothetical protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76342.09 Da        Isoelectric Point: 5.1478

>NTDB_id=800086 RFN65_RS03150 WP_309530049.1 621060..623045(+) (uvrB) [Bacillus subtilis strain CP35]
MKDRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSM
EIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAEDKAEYKTKAAPELSKMTKKERQKVVEQMEHEMKEAAK
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=800086 RFN65_RS03150 WP_309530049.1 621060..623045(+) (uvrB) [Bacillus subtilis strain CP35]
GTGAAAGATCGCTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGAAAGCCATTGAAAAGCTTGTGAAAGG
AATTCAGGAGGGCAAGAAGCATCAGACTCTGCTGGGTGCGACAGGAACTGGGAAAACATTTACGGTGTCTAATTTGATTA
AAGAAGTCAATAAGCCGACTCTCGTGATTGCCCATAACAAAACCCTTGCTGGACAGCTTTACAGTGAGTTCAAGGAATTT
TTTCCGAACAATGCTGTCGAGTATTTTGTCAGCTACTATGATTATTATCAGCCGGAGGCGTATGTGCCTCAAACGGATAC
ATTTATAGAGAAAGACGCTAGTATTAATGATGAAATTGATAAACTGAGACACTCCGCCACATCAGCTTTGTTTGAGCGCA
GAGATGTCATTATTATTGCGAGTGTGTCTTGTATATACGGCCTCGGTTCGCCTGAGGAATACCGGGAAATGGTTGTGTCA
CTGCGGACTGAAATGGAAATTGAGCGCAACGAGCTGCTCAGAAAACTTGTAGACATCCAATATGCCCGCAACGATATCGA
CTTTCAGCGCGGTACATTTCGTGTGCGCGGGGATGTAGTGGAAATCTTTCCGGCATCTCGTGATGAGCATTGTATCAGAG
TTGAATTTTTCGGTGACGAAATCGAACGGATTCGGGAAGTGGATGCGCTGACAGGAGAAATTCTCGGCGACCGAGATCAT
GTTGCGATTTTCCCGGCTTCCCACTTCGTAACGCGGGCCGAGAAAATGGAGAAGGCGATTCAAAATATCGAGAAGGAGCT
TGAGGAGCAGCTGAAGGTCATGCACGAAAACGGAAAACTCCTTGAAGCGCAGCGTTTAGAGCAGCGGACAAGATATGATC
TTGAAATGATGCGTGAAATGGGTTTCTGCTCCGGCATCGAGAACTATTCAAGACATTTGACTCTGCGGCCTCCAGGTTCA
ACGCCGTACACGCTTCTTGATTATTTCCCAGACGATTTTATGATCGTGGTGGATGAGTCGCATGTGACAATTCCTCAGGT
GCGAGGCATGTTTAACGGAGACCAGGCGCGGAAACAGGTGCTCGTGGATCACGGCTTCCGGCTTCCATCAGCGCTTGATA
ACCGTCCGCTTCGTTTTGAGGAATTTGAAAAGCATATGCACAATATCGTGTATGTATCAGCAACACCAGGGCCGTACGAG
ATTGAACATACAGATGAAATGGTCGAACAGATCATTCGTCCGACGGGGCTTCTTGACCCGCTTATTGACGTCCGTCCAAT
CGAAGGTCAGATTGACGACTTGATCGGCGAAATTCAAGCAAGAATCGAGCGGAATGAACGGGTGCTTGTGACAACTTTGA
CGAAGAAGATGTCAGAGGATCTGACCGATTATTTAAAGGAAATCGGCATTAAAGTAAACTATCTGCATTCTGAGATCAAG
ACGCTTGAACGGATTGAAATTATCCGCGACCTGCGCCTTGGCAAGTACGATGTGCTTGTCGGCATCAACCTGCTGAGGGA
AGGTTTGGACATTCCCGAAGTATCCCTTGTTGCGATTTTGGATGCGGATAAGGAAGGTTTCCTTCGTTCGGAGCGGTCGC
TGATCCAGACCATCGGACGGGCAGCGAGAAATGCGGAAGGCCGCGTCATTATGTACGCCGATAAAATAACGAAGTCTATG
GAAATTGCGATTAATGAAACAAAACGCCGCCGCGAGCAGCAGGAGCGGTTTAACGAAGAGCACGGCATTACGCCGAAAAC
GATAAATAAAGAAATTCGCGATGTCATTCGTGCCACAGTAGCAGCTGAAGATAAAGCGGAATACAAAACAAAAGCCGCGC
CGGAGCTGTCGAAAATGACGAAGAAAGAACGCCAGAAAGTCGTTGAACAGATGGAGCATGAAATGAAGGAAGCCGCCAAG
GCGCTTGACTTTGAAAGAGCCGCGGAGCTTCGCGATTTACTTTTAGAGCTAAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-249)

UvrB/uvrC motif (UVR)

(626-659)

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

Type III restriction enzyme, res subunit (ResIII)

(12-138)

Ultra-violet resistance protein B (UvrB)

(551-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.561

99.697

0.703
  uvrB Streptococcus pneumoniae R6

70.41

99.697

0.702
  uvrB Streptococcus pneumoniae D39

70.41

99.697

0.702