Detailed information NTG0799853

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: RFN60_RS13860
• Genome accession: NZ_CP133653
• Coordinates: 2672817..2673422 (-)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis strain CP38
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2667817..2678422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN60_RS13830 (RFN60_13830)	-	2668630..2669019 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
RFN60_RS13835 (RFN60_13835)	yajC	2669076..2669342 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
RFN60_RS13840 (RFN60_13840)	tgt	2669379..2670524 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
RFN60_RS13845 (RFN60_13845)	queA	2670551..2671579 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
RFN60_RS13850 (RFN60_13850)	yrzS	2671609..2671809 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
RFN60_RS13855 (RFN60_13855)	ruvB	2671802..2672806 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RFN60_RS13860 (RFN60_13860)	ruvA	2672817..2673422 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
RFN60_RS13865 (RFN60_13865)	bofC	2673561..2674073 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
RFN60_RS13870 (RFN60_13870)	csbX	2674121..2675428 (-)	1308	WP_003246197.1	MFS transporter	-
RFN60_RS13875 (RFN60_13875)	iolG	2675499..2676524 (-)	1026	WP_015714446.1	inositol 2-dehydrogenase	-
RFN60_RS13880 (RFN60_13880)	yrzF	2676762..2677409 (+)	648	WP_032722259.1	phosphotransferase	-
RFN60_RS13885 (RFN60_13885)	-	2677455..2677577 (-)	123	WP_003229707.1	hypothetical protein	-
RFN60_RS13895 (RFN60_13895)	-	2677740..2678108 (+)	369	WP_021480229.1	DUF5412 family protein	-
RFN60_RS13900 (RFN60_13900)	-	2678115..2678255 (+)	141	WP_029727127.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=799853 RFN60_RS13860 WP_003229717.1 2672817..2673422(-) (ruvA) [Bacillus subtilis strain CP38]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=799853 RFN60_RS13860 WP_003229717.1 2672817..2673422(-) (ruvA) [Bacillus subtilis strain CP38]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408