Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P1289_RS05875 Genome accession   NZ_CP119589
Coordinates   1245750..1246271 (-) Length   173 a.a.
NCBI ID   WP_042363429.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain H-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1240750..1251271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1289_RS05875 (P1289_05865) ssbA 1245750..1246271 (-) 522 WP_042363429.1 single-stranded DNA-binding protein Machinery gene
  P1289_RS05880 (P1289_05870) rpsF 1246290..1246595 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  P1289_RS05885 (P1289_05875) - 1247025..1247831 (+) 807 WP_069794228.1 GH25 family lysozyme -
  P1289_RS05890 (P1289_05880) ychF 1247981..1249078 (-) 1098 WP_042363431.1 redox-regulated ATPase YchF -
  P1289_RS05895 (P1289_05885) - 1249078..1249293 (-) 216 WP_029378813.1 DUF951 domain-containing protein -
  P1289_RS05900 (P1289_05890) - 1249315..1250199 (-) 885 WP_042363432.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19303.79 Da        Isoelectric Point: 4.9056

>NTDB_id=799820 P1289_RS05875 WP_042363429.1 1245750..1246271(-) (ssbA) [Staphylococcus xylosus strain H-1]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNNNTSNNNQSDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=799820 P1289_RS05875 WP_042363429.1 1245750..1246271(-) (ssbA) [Staphylococcus xylosus strain H-1]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAACAATAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTTGCAAATGCA
AACGGACCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

57.627

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

63.584

0.376