Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RDV59_RS08710 Genome accession   NZ_CP133476
Coordinates   1877354..1879345 (-) Length   663 a.a.
NCBI ID   WP_038676559.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872354..1884345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08685 (RDV59_08685) - 1872514..1873308 (-) 795 WP_002886806.1 ABC transporter substrate-binding protein -
  RDV59_RS08690 (RDV59_08690) - 1873370..1874479 (-) 1110 WP_038676550.1 aminotransferase -
  RDV59_RS08695 (RDV59_08695) - 1874725..1875522 (-) 798 WP_038676552.1 transporter substrate-binding domain-containing protein -
  RDV59_RS08700 (RDV59_08700) - 1875534..1876346 (-) 813 WP_038676554.1 transporter substrate-binding domain-containing protein -
  RDV59_RS08705 (RDV59_08705) - 1876562..1877026 (-) 465 WP_038676556.1 8-oxo-dGTP diphosphatase -
  RDV59_RS08710 (RDV59_08710) uvrB 1877354..1879345 (-) 1992 WP_038676559.1 excinuclease ABC subunit UvrB Machinery gene
  RDV59_RS08715 (RDV59_08715) - 1879335..1879955 (-) 621 WP_038676561.1 hypothetical protein -
  RDV59_RS08720 (RDV59_08720) - 1880026..1880961 (-) 936 WP_038676562.1 CPBP family intramembrane glutamic endopeptidase -
  RDV59_RS08725 (RDV59_08725) - 1881160..1883358 (+) 2199 WP_038676564.1 ABC transporter substrate-binding protein/permease -
  RDV59_RS08730 (RDV59_08730) - 1883358..1884098 (+) 741 WP_022496326.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76032.11 Da        Isoelectric Point: 4.5858

>NTDB_id=799727 RDV59_RS08710 WP_038676559.1 1877354..1879345(-) (uvrB) [Streptococcus salivarius strain LMG 11489]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDIIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGVENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISITKANEAEVAEDTVDYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=799727 RDV59_RS08710 WP_038676559.1 1877354..1879345(-) (uvrB) [Streptococcus salivarius strain LMG 11489]
ATGATAGATAGAAAAGAAGATAACCAATTCCATTTGGTTTCTAAATATGAACCTTCTGGGGATCAACCTCAGGCCATCGA
AGCCTTGGTGGATAATATTGAAGGTGGTGAGAAGGCTCAAATTCTAAAGGGGGCGACAGGGACAGGTAAGACTTATACCA
TGAGTCAGGTCATCCAGCGCGTCAATAAACCAACCTTGGTTATCGCCCACAATAAAACTTTGGCAGGTCAGCTTTATGGA
GAGTTCAAGGAGTTTTTCCCAGACAATGCTGTAGAATACTTCGTTTCCTACTATGATTTCTATCAGCCAGAGGCCTATGT
ACCGTCATCGGATACCTATATCGAAAAAGATAGCTCTGTAAATGATGAAATTGATAAGCTACGACACTCAGCAACGTCTG
CCCTCCTTGAGCGTAATGATATTATCGTTGTGGCTTCCGTTTCTTGTATTTACGGTTTGGGTTCGCCCAAAGAATATGCC
GATTCAGCGGTTAGTCTTCGTCCAGGCCAAGAAATTTCTCGAGATAAGTTGCTCAATGACCTGGTTGATATCCAGTTTGA
GCGAAATGACATTGATTTCCAACGTGGGAAATTCCGTGTACGTGGTGATGTGGTCGAAATCTTTCCTGCCAGCCGTGATG
AGCACGCCTTTCGTGTCGAATTTTTCGGTGATGAGATTGACCGCATCTGTGAGATTGAAAGTTTGACAGGACGCAATCTC
GGTGAAGTTGAGCACCTTGTTCTTTTCCCAGCGACTCACTTTATGACCAACGAAGAGCATATGGAAGAAGCCATCAAGAA
TATTATGGAAGAGATGGAAGCTCAGGTTAAGCAATTTGAGGCTGAGGGTAAGCTCATCGAGGCTCAACGTATCCGCCAAA
GGACAGAATACGATGTTGAAATGCTTCGTGAGATGGGTTACACCAATGGTGTTGAAAACTACTCACGACACATGGATGGA
CGTAAAGAAGGCGAGCCCCCCTTCACCTTGCTTGATTTCTTCCCAGAAGATTTCCTTATCATGATTGATGAAAGTCACAT
GACCATGGGTCAGATTAAGGGAATGTATAACGGGGACCAGGCCCGTAAGAAGATGTTGGTTGATTACGGTTTCCGTTTGC
CATCAGCGCTTGATAACCGTCCACTTCGACGTGAAGAATTTGAGAGTCATGTTCATCAGATTGTCTATGTGTCTGCCACT
CCAGGTGACTATGAGATGGAGCAAACTGAGACTGTCGTTGAGCAAATTATCCGTCCGACAGGGCTCCTTGATCCAGAAGT
CGAAGTGCGTCCAACTATGGGACAAATGGATGACCTCCTTGGTGAAATCAATGCCCGAACTGAAAAAGGCGAGCGTGTCT
TTGTAACCACTTTGACTAAGAAGATGGCTGAAGACTTGACTGACTATCTCAAGGAAATGGGTGTCAAGGTCAAATACATG
CACTCTGACATTAAGACTTTGGAGCGTACTGAGATTATCCGTGACCTACGTTTGGGTGTCTTTGATGTTCTTATTGGGAT
TAACCTTCTTCGTGAGGGGATTGATGTTCCCGAGGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGCTTCCTTC
GTAATGAACGTGGGCTTATCCAAACGATTGGACGTGCTGCCCGAAATAGCGAAGGGCATGTTATCATGTATGCGGATAAG
ATTACGGAGTCTATGCAAAAAGCCATGGATGAAACAGCTCGACGTCGTGAAATCCAGATGGCCTATAATAAGGAGCATGG
CATTGTTCCACAAACCATTAAGAAAGAAATTCGTGACCTTATTTCGATTACCAAGGCTAATGAAGCAGAAGTGGCAGAGG
ATACTGTGGACTACAGTGCTATGAACAAGAAAGAACGCCAAGAAGCTATCAAGAAACTTCAAAAACAAATGCATGAAGCA
GCAGAACTACTTGACTTTGAATTGGCGGCTCAAATCCGTGATATGGTGCTAGAATTGAAGAGTATGGATTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(628-660)

Type III restriction enzyme, res subunit (ResIII)

(17-133)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

86.124

100

0.861
  uvrB Streptococcus pneumoniae D39

86.124

100

0.861
  uvrB Streptococcus pneumoniae TIGR4

85.973

100

0.86