Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RDV58_RS07305 Genome accession   NZ_CP133475
Coordinates   1467923..1469914 (-) Length   663 a.a.
NCBI ID   WP_002267621.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462923..1474914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS07275 (RDV58_07265) - 1463271..1464407 (-) 1137 WP_002261967.1 aminotransferase -
  RDV58_RS07280 (RDV58_07270) - 1464623..1465438 (-) 816 WP_002261966.1 transporter substrate-binding domain-containing protein -
  RDV58_RS07285 (RDV58_07275) - 1465546..1466010 (-) 465 WP_002261965.1 8-oxo-dGTP diphosphatase -
  RDV58_RS07290 (RDV58_07280) - 1466068..1466958 (-) 891 WP_002267623.1 helix-turn-helix transcriptional regulator -
  RDV58_RS07295 - 1467149..1467262 (-) 114 WP_002264165.1 hypothetical protein -
  RDV58_RS07300 (RDV58_07285) - 1467262..1467594 (-) 333 WP_002261962.1 hypothetical protein -
  RDV58_RS07305 (RDV58_07290) uvrB 1467923..1469914 (-) 1992 WP_002267621.1 excinuclease ABC subunit UvrB Machinery gene
  RDV58_RS07310 (RDV58_07295) - 1470121..1471038 (-) 918 WP_002280055.1 CPBP family intramembrane glutamic endopeptidase -
  RDV58_RS07315 (RDV58_07300) - 1471229..1473415 (+) 2187 WP_002280056.1 ABC transporter substrate-binding protein/permease -
  RDV58_RS07320 (RDV58_07305) - 1473415..1474155 (+) 741 WP_002264169.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76084.90 Da        Isoelectric Point: 4.5849

>NTDB_id=799599 RDV58_RS07305 WP_002267621.1 1467923..1469914(-) (uvrB) [Streptococcus mutans strain LMG 14558]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPSQEISRDQLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVL
GEVDHLAIFPATHFMTNDEHMEVAIAKIQREMEEQVRFFEAEGKLIEAQRIRQRTEYDVEMLREMGYTSGVENYSRHMDG
RSEGEPPYTLLDFFPEDFLIVIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTVIEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINSRTDKGERIFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSQGHVIMYADT
VTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAITKANDSEVAEEAVDYNAMTKSERQEAIKKLQKQMQEA
AELLDFELAAQIRDMVLELKAMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=799599 RDV58_RS07305 WP_002267621.1 1467923..1469914(-) (uvrB) [Streptococcus mutans strain LMG 14558]
ATGATAGATAGGAAAGATAATAACCAGTTTCATCTGGTTTCAAAATATGAGCCGTCTGGTGATCAGCCTGAGGCCATTGA
GGCTTTGGTTGACAATATTGAAGGTGGTGAGAAAGCGCAAATTCTCAAAGGGGCGACTGGGACGGGGAAAACCTATACCA
TGAGTCAAGTTATTCAAAAAGTCAATAAACCGACTTTAGTCATCGCTCATAATAAAACTCTAGCTGGTCAGCTTTACGGT
GAATTTAAGGAATTTTTCCCAGATAATGCAGTTGAGTATTTTGTTTCTTACTATGATTATTATCAGCCTGAAGCCTATGT
GCCATCAAGTGATACCTATATTGAAAAAGATAGTTCAGTTAATGATGAGATTGATAAGCTCCGACATTCGGCAACATCTG
CCCTTTTGGAACGCAATGATGTCATTGTCGTAGCATCCGTCTCCTGTATTTATGGTTTAGGGTCGCCCAAGGAATATGCA
GATAGCGTGGTTAGTCTGCGTCCCAGTCAGGAGATTTCTCGTGACCAATTGTTAAATGATTTGGTAGATATTCAGTTTGA
GCGCAACGATATTGATTTCCAGCGGGGACGTTTTCGTGTGCGCGGCGATGTGGTGGAAATTTTTCCAGCATCACGTGATG
AACATGCTTTTCGTGTGGAATTTTTCGGTGATGAGATTGATCGTATCAGAGAAATTGAGAGTTTAACAGGTCGTGTTCTT
GGTGAAGTAGATCACTTGGCTATTTTTCCGGCGACTCACTTTATGACTAACGATGAGCACATGGAAGTGGCTATTGCCAA
GATTCAAAGGGAAATGGAAGAGCAAGTCAGGTTTTTTGAAGCAGAAGGGAAATTGATTGAAGCACAGCGTATTCGCCAAA
GAACAGAGTATGATGTGGAAATGCTGCGGGAGATGGGCTATACTAGCGGCGTTGAAAACTATTCGCGTCATATGGATGGC
CGCAGTGAGGGAGAACCGCCTTATACACTTCTTGACTTTTTTCCAGAGGATTTCCTCATCGTGATCGATGAAAGCCACAT
GACTATGGGGCAGATTAAAGGTATGTATAATGGTGACCGATCGCGCAAGGAGATGTTGGTCAACTATGGTTTTCGTCTGC
CAAGTGCGCTGGACAATCGACCGCTGCGTCGAGAAGAATTTGAAAGCCATGTCCATCAGATTGTCTATGTTTCAGCAACA
CCAGGTGACTATGAGATGGAGCAGACGGACACGGTTATTGAGCAAATTATCCGTCCGACTGGTCTCTTGGATCCAGAAGT
GGAAGTTCGGCCAACCATGGGACAGATGGATGATCTGCTGGGTGAAATCAATAGCAGAACTGATAAAGGCGAGCGGATCT
TTATTACAACCTTAACCAAGAAAATGGCGGAAGATTTGACCGACTACCTCAAGGAAATGGGGGTCAAAGTCAAGTACATG
CATTCTGACATCAAGACTCTGGAACGTACTGAAATTATCCGCGACCTTCGTTTAGGTGTTTTTGATGTTCTTATCGGTAT
CAATTTGCTGCGCGAAGGTATTGATGTGCCAGAGGTTAGTCTGGTTGCCATTCTTGATGCAGACAAAGAAGGTTTTCTCC
GCAATGAACGTGGTCTTATCCAGACCATTGGACGGGCTGCGCGCAACAGTCAAGGACATGTTATTATGTATGCTGATACT
GTGACGCAGTCCATGCGTCGCGCTATTGATGAGACCCACCGCCGCCGCCAAATCCAAATGGCTTACAATGAAGAGCATGG
TATTATTCCACAAACCATCAAAAAAGATATCCGCGATCTTATCGCGATTACAAAAGCAAATGATTCTGAAGTGGCTGAGG
AGGCTGTGGATTATAATGCAATGACCAAATCTGAACGTCAAGAAGCCATCAAGAAACTGCAAAAACAAATGCAAGAAGCA
GCTGAACTGCTTGATTTTGAACTGGCTGCTCAAATCCGCGATATGGTTTTAGAATTGAAGGCGATGGATTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(628-661)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

89.14

100

0.891
  uvrB Streptococcus pneumoniae D39

89.14

100

0.891
  uvrB Streptococcus pneumoniae TIGR4

88.989

100

0.89