Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   RDV58_RS02685 Genome accession   NZ_CP133475
Coordinates   529114..531129 (+) Length   671 a.a.
NCBI ID   WP_002279913.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524114..536129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS02670 (RDV58_02670) - 526166..527200 (+) 1035 WP_318590905.1 3-deoxy-7-phosphoheptulonate synthase -
  RDV58_RS02675 (RDV58_02675) acpS 527470..527829 (+) 360 WP_002263463.1 holo-ACP synthase -
  RDV58_RS02680 (RDV58_02680) alr 527826..528941 (+) 1116 WP_002279912.1 alanine racemase -
  RDV58_RS02685 (RDV58_02685) recG/mmsA 529114..531129 (+) 2016 WP_002279913.1 ATP-dependent DNA helicase RecG Machinery gene
  RDV58_RS02690 (RDV58_02690) - 531272..531436 (-) 165 WP_002263466.1 hypothetical protein -
  RDV58_RS02695 (RDV58_02695) - 531463..532422 (-) 960 WP_002264939.1 asparaginase -
  RDV58_RS02700 (RDV58_02700) - 532495..533880 (+) 1386 WP_002268948.1 Cof-type HAD-IIB family hydrolase -
  RDV58_RS02705 (RDV58_02705) - 534158..534607 (-) 450 WP_002263469.1 universal stress protein -
  RDV58_RS02710 (RDV58_02710) - 534705..535241 (-) 537 WP_002279914.1 biotin transporter BioY -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75333.15 Da        Isoelectric Point: 7.1243

>NTDB_id=799560 RDV58_RS02685 WP_002279913.1 529114..531129(+) (recG/mmsA) [Streptococcus mutans strain LMG 14558]
MDLQSSLAVLKGLGPKSAEKFHRLGIYTIEDLLLYYPFRYEDFKAKSVLDLLDGEKAVVTGKVVTPANVQYYGFKRNRLS
FKIKQDEAVIAVSFFNQPYLQDKVELDQDIAIFGKWDQKKSALTGMKILAQVTDDMQPVYHVAQGISQSALIKAIQSVFD
AGYLRFLSENLPQILLDKYRLLDRQTATRAMHFPKDLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHD
QVAAKIADLPFALTNAQKRSLDEILADMESGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILAEQHYES
LRTLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSLIDELPAGRKPIVTRWVKHEQLDKVLPWVKEQLKKKAQVYVISPLIEESETLDLKN
AVALEEDLKAYFASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGEKQSYAILVANPKTDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEIFGVRQSGIPEFQVADIVEDYPILEEARK
VASQIVAVKDWCQDKRWAILVQNLKQKEILD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=799560 RDV58_RS02685 WP_002279913.1 529114..531129(+) (recG/mmsA) [Streptococcus mutans strain LMG 14558]
ATGGACTTACAGTCATCACTTGCGGTTTTAAAGGGATTAGGTCCTAAGTCTGCAGAAAAATTTCATAGATTAGGCATTTA
TACCATTGAGGATTTGTTGCTTTACTATCCTTTTCGTTATGAGGACTTTAAGGCAAAATCTGTTTTAGATTTGTTAGATG
GTGAAAAAGCTGTTGTTACTGGAAAAGTAGTGACCCCAGCTAATGTACAATATTATGGGTTTAAACGCAATCGTCTATCT
TTTAAAATAAAACAAGATGAAGCTGTTATTGCTGTTTCTTTTTTTAATCAGCCTTATTTACAAGATAAGGTGGAGCTTGA
TCAGGATATTGCTATTTTTGGAAAATGGGATCAAAAGAAGTCAGCTCTTACGGGCATGAAGATTTTGGCTCAAGTGACAG
ATGATATGCAGCCTGTTTATCATGTGGCACAAGGAATATCACAGTCAGCTCTGATTAAGGCTATTCAATCTGTTTTTGAT
GCTGGCTATTTACGCTTTTTATCTGAAAATTTACCGCAGATTCTGCTTGATAAATATCGTTTGTTAGACAGACAAACAGC
TACGCGGGCTATGCATTTTCCGAAAGATTTGGAAGAATATAAACAAGCCTTGCGCCGCATCAAATTTGAGGAACTCTTTT
ATTTTCAACTCAATTTGCAGGTTCTTAAAGCAAATAATAAATCAGAATCAAATGGTCTGCTTATTACTTATGATCACGAT
CAAGTGGCTGCTAAAATAGCTGATTTGCCTTTTGCCTTGACGAATGCCCAAAAAAGGAGCTTAGACGAAATTCTGGCAGA
TATGGAGTCTGGCGCTCATATGAATCGGCTTTTACAGGGAGATGTCGGTTCTGGTAAGACAGTCATTGCCAGTCTTGCTA
TGTATGCAGCCTATAGTGCAGGTCTGCAGTCTGCTTTGATGGTTCCTACGGAAATTTTAGCGGAACAACATTATGAAAGT
TTAAGGACTTTATTTCCTGAACTTTCAATTGCACTTTTGACGTCTGGAATGAAGGCTGCTGTAAGACGTTCAGCCTTAGC
AGCTATCGCTGATGGCTCAGTAGATATGATTGTTGGTACCCACGCTCTCATTCAAGAAGGTGTTGATTACCATAAATTAG
GCTTAGTTATTACGGATGAACAACATCGATTTGGTGTTAAGCAAAGGCGACTGTTTAGGGAAAAGGGAGAGAATCCTGAT
GTTCTCATGATGACAGCCACACCTATTCCTAGAACCTTGGCTATTACTGCCTTTGGCGAAATGGATGTTTCTCTTATTGA
TGAATTGCCAGCAGGTCGCAAACCGATTGTTACACGTTGGGTTAAGCATGAACAGTTAGATAAAGTTCTGCCTTGGGTTA
AAGAACAGCTCAAGAAAAAGGCACAAGTCTATGTCATTTCACCTTTGATTGAGGAGTCTGAAACCTTGGATTTGAAAAAT
GCTGTCGCTTTAGAAGAAGACTTAAAAGCTTATTTTGCGTCGTCTGCTAATATTGCTCTTATGCATGGTCGTATGAAAAA
TGATGAAAAAGAAGCCATTATGCAGGCTTTCAAAAAGGGCAGTATTGATATTCTGGTTTCAACAACTGTCATTGAAGTTG
GGGTCAATGTACCTAATGCTACGATTATGATTATTATGGATGCCGATCGTTTTGGTCTTAGTCAATTGCATCAATTACGA
GGACGTGTAGGACGTGGAGAAAAGCAATCCTATGCCATTTTAGTTGCTAATCCTAAAACGGATACTGGGAAAAATCGCAT
GCGCATTATGACAAAAACAACAGATGGCTTTGTTTTGGCTGAAGAAGATTTAAAAATGCGTGGTTCAGGAGAAATTTTTG
GTGTTCGTCAATCTGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGATTACCCTATTTTAGAAGAGGCTAGAAAA
GTGGCTAGTCAAATTGTGGCCGTTAAAGATTGGTGTCAAGATAAACGATGGGCAATTCTTGTGCAAAATCTTAAGCAAAA
AGAAATTTTGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

DEAD/DEAH box helicase (DEAD)

(254-409)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

RecG wedge domain (RecG_wedge)

(10-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.747

100

0.697
  recG/mmsA Streptococcus pneumoniae R36A

69.747

100

0.697
  recG Bacillus subtilis subsp. subtilis str. 168

49.48

100

0.496
  recG Neisseria meningitidis strain C311

39.51

97.317

0.385