Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RDV58_RS00545 Genome accession   NZ_CP133475
Coordinates   103937..104530 (-) Length   197 a.a.
NCBI ID   WP_002266975.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98937..109530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS00515 (RDV58_00515) - 99199..99399 (-) 201 Protein_95 hypothetical protein -
  RDV58_RS00520 (RDV58_00520) - 99540..99965 (-) 426 WP_002271571.1 hypothetical protein -
  RDV58_RS00525 (RDV58_00525) spx 100216..100614 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  RDV58_RS00530 (RDV58_00530) recA 100699..101850 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  RDV58_RS00535 (RDV58_00535) cinA 101890..103146 (-) 1257 WP_002280016.1 competence/damage-inducible protein A Machinery gene
  RDV58_RS00540 (RDV58_00540) - 103295..103855 (-) 561 WP_002266114.1 DNA-3-methyladenine glycosylase I -
  RDV58_RS00545 (RDV58_00545) ruvA 103937..104530 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA Machinery gene
  RDV58_RS00550 (RDV58_00550) hexB 104712..106667 (-) 1956 WP_002280015.1 DNA mismatch repair endonuclease MutL Machinery gene
  RDV58_RS00555 (RDV58_00555) - 106893..107171 (+) 279 Protein_103 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21866.09 Da        Isoelectric Point: 5.6313

>NTDB_id=799525 RDV58_RS00545 WP_002266975.1 103937..104530(-) (ruvA) [Streptococcus mutans strain LMG 14558]
MYDYIKGNLTKITAKYIVLEAGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=799525 RDV58_RS00545 WP_002266975.1 103937..104530(-) (ruvA) [Streptococcus mutans strain LMG 14558]
ATGTACGATTATATTAAAGGTAATTTAACCAAAATTACAGCTAAATATATTGTTTTAGAAGCTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

71.574

100

0.716
  ruvA Streptococcus pneumoniae D39

71.574

100

0.716
  ruvA Streptococcus pneumoniae TIGR4

71.574

100

0.716
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411