Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   L6479_RS09730 Genome accession   NZ_AP022921
Coordinates   1898906..1899619 (-) Length   237 a.a.
NCBI ID   WP_000793097.1    Uniprot ID   -
Organism   Bacillus cereus strain J1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893906..1904619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6479_RS09715 (BCJMU01_1839) hitR 1895631..1896308 (+) 678 WP_042332905.1 envelope stress response regulator transcription factor HitR -
  L6479_RS09720 (BCJMU01_1840) hitS 1896305..1897375 (+) 1071 WP_236788192.1 envelope stress sensor histidine kinase HitS -
  L6479_RS09725 (BCJMU01_1841) - 1897493..1898905 (-) 1413 WP_062922335.1 HAMP domain-containing sensor histidine kinase -
  L6479_RS09730 (BCJMU01_1842) scnR 1898906..1899619 (-) 714 WP_000793097.1 response regulator transcription factor Regulator
  L6479_RS09735 (BCJMU01_1843) - 1899817..1900167 (-) 351 WP_236788194.1 YxeA family protein -
  L6479_RS09740 - 1900190..1900921 (-) 732 WP_236788202.1 ABC transporter permease -
  L6479_RS09745 (BCJMU01_1845) - 1900934..1901686 (-) 753 WP_062922339.1 ABC transporter permease -
  L6479_RS09750 (BCJMU01_1846) - 1901683..1902600 (-) 918 WP_236788204.1 ABC transporter ATP-binding protein -
  L6479_RS09755 (BCJMU01_1847) - 1903071..1903790 (+) 720 WP_000818985.1 3-ketoacyl-ACP reductase -
  L6479_RS09760 (BCJMU01_1848) - 1903940..1904611 (+) 672 WP_142288061.1 O-methyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26955.37 Da        Isoelectric Point: 6.1343

>NTDB_id=79948 L6479_RS09730 WP_000793097.1 1898906..1899619(-) (scnR) [Bacillus cereus strain J1]
MKNLKDKKILIVDDEREIRIMIEKLLRKEGFFRIYATGDCTSALSFCQTNNPDIAILDVMLPDGDGFSLLSSIRQFSTIP
VLFLSARGEDEDRLLGLGLGADDYLVKPFLPRELLLRLIAILKRVYSSSIADRLSTFKLGEQIVDLESAVVHREQQQIPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIHLLTFRGLGYKLLVKETD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=79948 L6479_RS09730 WP_000793097.1 1898906..1899619(-) (scnR) [Bacillus cereus strain J1]
ATGAAAAATTTAAAAGACAAAAAAATATTGATTGTAGATGATGAACGAGAAATCAGAATAATGATTGAAAAACTTTTGAG
AAAAGAGGGATTTTTTCGTATTTATGCTACTGGTGACTGTACCTCTGCTCTATCATTTTGCCAGACAAACAATCCAGATA
TTGCGATTCTAGATGTTATGTTACCTGATGGTGACGGATTTTCATTACTGTCTTCCATTAGGCAATTTTCGACTATACCA
GTTCTTTTTCTCTCCGCGCGGGGAGAAGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACTTGGTAAA
ACCGTTTTTGCCACGTGAGTTGCTATTACGACTCATAGCGATTTTGAAGCGTGTATACTCCTCCTCAATCGCAGATCGTC
TATCTACCTTCAAATTAGGAGAACAAATTGTCGATCTCGAAAGCGCTGTTGTGCACAGAGAACAACAACAAATTCCCTTG
ACTGCAAAGGAGCATGCCATTCTTGTAAAGCTCTATGAAAATCAAGGACGAATCATTACAAATGATGCCTTATGTCAAGC
GGTTTGGGGAGATGACAGCTACGGCCTTGAGAATACATTAATGGTTCATATCAGACGGATACGTGAAAAGATTGAACTGG
ATCCTTCCAAACCAATCCATCTCCTTACCTTCAGGGGACTAGGTTATAAATTACTAGTAAAGGAGACGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.784

97.468

0.485
  micA Streptococcus pneumoniae Cp1015

40.435

97.046

0.392
  vicR Streptococcus mutans UA159

39.827

97.468

0.388

Multiple sequence alignment