Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   P2C01_RS13620 Genome accession   NZ_CP119521
Coordinates   2917324..2918328 (-) Length   334 a.a.
NCBI ID   WP_275723101.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2912324..2923328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS13595 aroK 2913204..2913722 (-) 519 WP_004728569.1 shikimate kinase AroK -
  P2C01_RS13600 pilQ 2913910..2915634 (-) 1725 WP_275723097.1 type IV pilus secretin PilQ Machinery gene
  P2C01_RS13605 pilP 2915659..2916171 (-) 513 WP_275723099.1 pilus assembly protein PilP Machinery gene
  P2C01_RS13610 pilO 2916161..2916751 (-) 591 WP_004728566.1 type 4a pilus biogenesis protein PilO Machinery gene
  P2C01_RS13615 pilN 2916744..2917334 (-) 591 WP_158165891.1 PilN domain-containing protein Machinery gene
  P2C01_RS13620 pilM 2917324..2918328 (-) 1005 WP_275723101.1 type IV pilus assembly protein PilM Machinery gene
  P2C01_RS13625 - 2918473..2920953 (+) 2481 WP_238773789.1 penicillin-binding protein 1A -
  P2C01_RS13630 oxyR 2921041..2921937 (-) 897 WP_014204332.1 DNA-binding transcriptional regulator OxyR -
  P2C01_RS13635 - 2922081..2922815 (+) 735 WP_275723102.1 glutathione peroxidase -
  P2C01_RS13640 - 2922939..2923202 (+) 264 WP_275723103.1 DUF3624 domain-containing protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36875.19 Da        Isoelectric Point: 6.6617

>NTDB_id=799467 P2C01_RS13620 WP_275723101.1 2917324..2918328(-) (pilM) [Vibrio furnissii strain C1]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSDDIFADNHTLDYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSDLDASEQEFAVYQAFSHQSPFPIDDLSLDFVPSGDNPAGRSTNTLYQVYATRREVVDNRLSVASKAGFEP
LLLDVQVHGLLQIWQWVSRAQQRDDWMLVDVGLTQTTLCMDFADKAPFYKDIPLGTRQWHVDPAPHPVPLSEPPMAGVNE
LVERIARQVQLLLSLQGHQALGGIWLSGGGATTEGLSAALAARLNLPCELFHPLTGFVTRRRMRARVPDDLQRFSTAAGL
ALRGLNWLERDHGA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=799467 P2C01_RS13620 WP_275723101.1 2917324..2918328(-) (pilM) [Vibrio furnissii strain C1]
ATGGGTAAATCATTAGTTACAGGTGTCGATATCGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAGGGCGAATC
GTATTCGCTGGTCGGCTACCAAGAAATAGTCGTATCCGACGATATTTTCGCTGATAACCACACGCTGGATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTGCCGCTATTTAGTCGCAAAGTTGCGCTGGCTGTGCCGGATAATGCG
GTAATAAGTAAGGTATTACAGATAGATAGCGATTTAGATGCCAGCGAACAAGAATTTGCTGTCTATCAGGCGTTTTCCCA
TCAATCGCCGTTTCCCATCGATGATCTGAGTTTGGATTTCGTACCAAGCGGCGATAACCCCGCCGGGCGCAGCACCAACA
CCCTGTATCAAGTGTACGCCACGCGACGTGAAGTCGTCGATAACCGGTTATCGGTGGCGAGCAAAGCGGGCTTTGAGCCG
CTGCTGCTCGATGTGCAGGTGCATGGGTTGCTCCAGATTTGGCAATGGGTGAGTCGCGCGCAGCAGCGCGACGATTGGAT
GCTGGTGGACGTCGGGCTGACGCAAACCACGTTATGCATGGATTTCGCCGATAAAGCGCCCTTCTATAAAGACATTCCGC
TGGGAACGCGTCAATGGCATGTCGACCCCGCTCCTCATCCTGTGCCGCTGAGCGAGCCTCCGATGGCTGGGGTGAACGAG
CTGGTTGAACGAATTGCGCGCCAAGTGCAACTGCTGTTGTCCTTGCAGGGCCATCAAGCGCTGGGCGGGATTTGGCTGTC
GGGCGGTGGGGCGACGACTGAAGGCCTCAGCGCGGCTTTGGCTGCGCGACTGAATCTGCCGTGTGAACTGTTTCATCCGC
TGACGGGATTTGTGACGCGCCGCCGCATGCGAGCGCGTGTGCCTGACGATCTGCAACGCTTTAGTACGGCGGCCGGCTTG
GCGCTGCGCGGACTCAACTGGTTGGAGCGTGACCATGGTGCATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(239-324)

Type IV pilus assembly protein PilM; (PilM_2)

(8-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

64.307

100

0.653
  pilM Vibrio campbellii strain DS40M4

45.266

100

0.458