Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   P2C01_RS13815 Genome accession   NZ_CP119521
Coordinates   2957577..2958584 (-) Length   335 a.a.
NCBI ID   WP_004728525.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952577..2963584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS13790 rraA 2953209..2953745 (-) 537 WP_004728530.1 ribonuclease E activity regulator RraA -
  P2C01_RS13795 - 2953821..2954738 (-) 918 WP_275723121.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  P2C01_RS13800 hslU 2954832..2956163 (-) 1332 WP_158141355.1 HslU--HslV peptidase ATPase subunit -
  P2C01_RS13805 hslV 2956200..2956757 (-) 558 WP_014204312.1 ATP-dependent protease subunit HslV -
  P2C01_RS13810 - 2956896..2957447 (-) 552 WP_038152602.1 SPOR domain-containing protein -
  P2C01_RS13815 cytR 2957577..2958584 (-) 1008 WP_004728525.1 DNA-binding transcriptional regulator CytR Regulator
  P2C01_RS13820 priA 2958892..2961093 (-) 2202 WP_143680264.1 primosomal protein N' -
  P2C01_RS13825 rpmE 2961340..2961558 (+) 219 WP_004728523.1 50S ribosomal protein L31 -
  P2C01_RS13830 - 2961769..2963043 (+) 1275 WP_275723126.1 malic enzyme-like NAD(P)-binding protein -
  P2C01_RS13835 metJ 2963120..2963437 (-) 318 WP_004728521.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36886.40 Da        Isoelectric Point: 6.3510

>NTDB_id=799468 P2C01_RS13815 WP_004728525.1 2957577..2958584(-) (cytR) [Vibrio furnissii strain C1]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQIAGPEAAVLCQFRQQGYQQALRRAGISRNPTYSTIGDFTFESGAKAVRQLMALPEPPTA
IFCHNDTMAIGAIQEAKRLGMRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLD
TQLVIRESAAPPRSA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=799468 P2C01_RS13815 WP_004728525.1 2957577..2958584(-) (cytR) [Vibrio furnissii strain C1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCGACGGCGACAGTCTCGCGCGCTCTGATGAATCCCGAGAA
AGTTTCAGCCTCAACTCGTAAACGAGTTGAAGAGGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCCCGAAATC
TGCGTCGCAATGAATCGAAAACCATTGTCGCGATCGTGCCGGACATCTGTGATCCTTATTACACCGAAATTATTCGTGGT
ATCGAAGACGCCGCGATGGAACACGGTTATCTGGTACTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACTTGGTGTTTACCAAACAGGCGGACGGTATGCTATTGCTGGGGACCGATTTGCCGTTTGACGTGAGCAAACCTG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCAGAACTTGAGTTGCCGACGGTGCATATCGATAAC
CTGACATCTGCCTTTGAAGCGGTGAACTATCTGACGCAGATGGGGCACAAACGCATCGCGCAGATTGCCGGCCCTGAAGC
GGCGGTGTTGTGTCAGTTCCGTCAGCAAGGGTATCAACAAGCCCTGCGCCGCGCGGGGATTTCACGCAATCCAACCTACA
GTACCATCGGTGACTTTACGTTTGAGTCGGGTGCCAAAGCGGTGCGCCAATTGATGGCCTTGCCAGAGCCGCCGACAGCC
ATTTTCTGTCACAACGATACCATGGCGATTGGTGCCATTCAGGAAGCCAAGCGTTTGGGCATGCGTGTGCCGCAAGACCT
GTCTGTGGTCGGCTTTGATGACATTCAGTTTGCGCAGTACTGCGATCCACCGCTAACCACCATTTCTCAGCCGCGTTACG
AGATCGGCCGTCAGGCGATGTTGATGATGCTTGAGTTACTGCGGGGTCATGATGTGCGTGCGGGCTCGCGTCTGCTCGAC
ACCCAATTGGTCATTCGCGAGAGTGCAGCGCCGCCCCGCTCGGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.373

99.104

0.925
  cytR Vibrio parahaemolyticus RIMD 2210633

90.149

100

0.901