Detailed information NTG0799468

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RDV54_RS06125
• Genome accession: NZ_CP133471
• Coordinates: 1300911..1301909 (-)
• Length: 332 a.a.
• NCBI ID: WP_004239104.1
• Uniprot ID: -
• Organism: Streptococcus mitis strain LMG 14557
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1295911..1306909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV54_RS06105 (RDV54_06105)	eeP	1297160..1298419 (-)	1260	WP_000900673.1	RIP metalloprotease RseP	Regulator
RDV54_RS06110 (RDV54_06110)	-	1298441..1299244 (-)	804	WP_000189860.1	phosphatidate cytidylyltransferase	-
RDV54_RS06115 (RDV54_06115)	-	1299253..1300011 (-)	759	WP_000466726.1	isoprenyl transferase	-
RDV54_RS06120 (RDV54_06120)	-	1300358..1300930 (-)	573	WP_001028387.1	nucleotidyltransferase family protein	-
RDV54_RS06125 (RDV54_06125)	ruvB	1300911..1301909 (-)	999	WP_004239104.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RDV54_RS06130 (RDV54_06130)	-	1302043..1302135 (+)	93	WP_000970293.1	type I toxin-antitoxin system Fst family toxin	-
RDV54_RS06135 (RDV54_06135)	-	1302943..1303359 (-)	417	WP_000628389.1	GNAT family N-acetyltransferase	-
RDV54_RS06140 (RDV54_06140)	-	1303371..1304066 (-)	696	WP_001144927.1	GNAT family N-acetyltransferase	-
RDV54_RS06145 (RDV54_06145)	leuS	1304261..1306762 (-)	2502	WP_000011743.1	leucine--tRNA ligase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37244.67 Da
• Isoelectric Point: 4.5018

>NTDB_id=799468 RDV54_RS06125 WP_004239104.1 1300911..1301909(-) (ruvB) [Streptococcus mitis strain LMG 14557]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DLITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=799468 RDV54_RS06125 WP_004239104.1 1300911..1301909(-) (ruvB) [Streptococcus mitis strain LMG 14557]
ATGAGTAGAATTTTAGATAATGAGATAATGGGGGACGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTACTTACGTGA
ATATATTGGGCAGGACAAGGTCAAGGACCAGCTCCAAATCTTTATCGAAGCTGCCAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGCCCTCCAGGCTTGGGAAAAACGACCATGGCTTTTGTTATTGCCAACGAACTAGGTGTCAATCTC
AAGCAGACTTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCGATTTTGAATGACTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATTCATCGCTTGCCCATGTCGGTGGAAGAGGTGCTTTATAGTGCCATGGAAGACTTCTACATTGACA
TCATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCACCTTTCACTTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCGTTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
GGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACCCATGAGGCAGCATCTGAGTTGGCATTGCGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTTATCGAT
GATCTTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
CACCATGATTGAGATGTACGGTGGTGGTCCTGTTGGTCTAGGAACTCTTTCTGTTAACATAGCAGAAGAACGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACGCGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATATAGTGAAAAATGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	99.096	100	0.991
ruvB	Streptococcus pneumoniae R6	99.096	100	0.991
ruvB	Streptococcus pneumoniae D39	99.096	100	0.991
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	48.193	100	0.482