Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   P2C01_RS13530 Genome accession   NZ_CP119521
Coordinates   2897154..2897786 (+) Length   210 a.a.
NCBI ID   WP_275723085.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2892154..2902786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS13510 - 2894071..2894541 (+) 471 WP_275723078.1 TIGR02444 family protein -
  P2C01_RS13515 - 2894672..2895649 (+) 978 WP_275723081.1 hydrolase -
  P2C01_RS13520 - 2895738..2895947 (+) 210 WP_004728584.1 YheU family protein -
  P2C01_RS13525 - 2896042..2896911 (+) 870 WP_004728583.1 phosphoribulokinase -
  P2C01_RS13530 crp 2897154..2897786 (+) 633 WP_275723085.1 cAMP-activated global transcriptional regulator CRP Regulator
  P2C01_RS13535 - 2897869..2898663 (-) 795 WP_143680281.1 DUF1338 domain-containing protein -
  P2C01_RS13540 astD 2898847..2900304 (-) 1458 WP_238820885.1 succinylglutamate-semialdehyde dehydrogenase -
  P2C01_RS13545 astA 2900338..2901357 (-) 1020 WP_004728579.1 arginine N-succinyltransferase -
  P2C01_RS13550 - 2901457..2902668 (-) 1212 WP_275723088.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23594.35 Da        Isoelectric Point: 7.4012

>NTDB_id=799462 P2C01_RS13530 WP_275723085.1 2897154..2897786(+) (crp) [Vibrio furnissii strain C1]
MVLGKPQTDPTLEWFLSHCHIHEYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=799462 P2C01_RS13530 WP_275723085.1 2897154..2897786(+) (crp) [Vibrio furnissii strain C1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATGAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACGTTGTACTACATCGTCAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTCAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCAGACATCCTGATGCGCCTGTCTGGTCAGATGGCTCGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCGTTCTTAGACGTAACCGGTCGTATTGCACAGACCCTACTGAACTTGGCGAAACAACCCGACGCAATGACTCAC
CCAGACGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCACGTGAAACCGTGGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACTTGATTTCTGCACACGGTAAAACCATCGTGGTGTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467