Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RDV54_RS03335 Genome accession   NZ_CP133471
Coordinates   674486..676474 (-) Length   662 a.a.
NCBI ID   WP_000610420.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669486..681474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS03305 (RDV54_03305) - 670036..671514 (-) 1479 WP_000687783.1 sugar ABC transporter ATP-binding protein -
  RDV54_RS03310 (RDV54_03310) rbsD 671528..671926 (-) 399 WP_000759833.1 D-ribose pyranase -
  RDV54_RS03315 (RDV54_03315) rbsK 671901..672812 (-) 912 WP_000036807.1 ribokinase -
  RDV54_RS03320 (RDV54_03320) - 672812..673786 (-) 975 WP_000207599.1 LacI family DNA-binding transcriptional regulator -
  RDV54_RS03325 (RDV54_03325) - 673922..673999 (+) 78 Protein_637 DNA-binding transcriptional regulator -
  RDV54_RS03330 (RDV54_03330) - 673996..674463 (-) 468 WP_000091556.1 8-oxo-dGTP diphosphatase -
  RDV54_RS03335 (RDV54_03335) uvrB 674486..676474 (-) 1989 WP_000610420.1 excinuclease ABC subunit UvrB Machinery gene
  RDV54_RS03340 (RDV54_03340) - 676551..677504 (-) 954 WP_000791259.1 CPBP family intramembrane glutamic endopeptidase -
  RDV54_RS03345 (RDV54_03345) - 677678..679843 (+) 2166 WP_078228414.1 ABC transporter substrate-binding protein/permease -
  RDV54_RS03350 (RDV54_03350) - 679843..680583 (+) 741 WP_001096315.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 75789.86 Da        Isoelectric Point: 4.5678

>NTDB_id=799436 RDV54_RS03335 WP_000610420.1 674486..676474(-) (uvrB) [Streptococcus mitis strain LMG 14557]
MINRITDNQFKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYG
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGLEISRDKLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYENEQTETVIEQIIRPTGLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
MTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVAKEEDKEVDINSLNKQERKDLVKKLEKQMQEAV
EVLDFELAAQIRDMMLEVKALD

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=799436 RDV54_RS03335 WP_000610420.1 674486..676474(-) (uvrB) [Streptococcus mitis strain LMG 14557]
ATGATTAACCGCATTACTGACAATCAATTTAAACTAGTATCAAAATATGAACCATCAGGAGACCAACCCCAAGCTATCGA
GCAGTTGGTTGATAATATCGAGGGGGGCGAAAAAGCTCAGATTCTGATGGGGGCGACTGGTACAGGGAAGACCTATACCA
TGAGTCAGGTCATTTCCAAAGTCAATAAACCCACTCTGGTCATCGCCCACAATAAGACTCTGGCAGGACAGCTCTATGGG
GAGTTTAAGGAATTTTTCCCTGAGAATGCTGTTGAGTATTTTGTGTCTTACTATGATTATTACCAGCCAGAGGCCTATGT
TCCTTCTAGTGATACCTATATTGAGAAGGACAGCTCTGTCAATGACGAGATTGATAAACTCCGCCACTCAGCGACTTCGG
CTCTTTTGGAGCGTAATGATGTCATTGTTGTGGCTTCTGTCTCTTGTATCTATGGTTTGGGTTCGCCCAAGGAATACGCT
GATAGTGTCGTTAGTCTCCGTCCAGGTCTTGAAATTTCTCGTGATAAACTCTTGAATGACTTGGTTGATATCCAGTTTGA
ACGTAATGATATTGATTTCCAACGGGGAAGATTTCGTGTGCGTGGGGATGTAGTGGAGATTTTCCCTGCTTCCCGTGATG
AACATGCCTTTCGAGTGGAGTTTTTCGGAGACGAGATTGACCGTATCCGTGAGGTTGAGGCTCTGACAGGCCAGGTATTG
GGAGAAGTGGATCATTTGGCGATTTTCCCAGCTACTCACTTTGTGACCAATGACGACCATATGGAAGTGGCTATTGCCAA
GATTCAGGCAGAGTTGGAGGAGCAGTTAGCTGTCTTTGAGAAGGAAGGCAAATTACTTGAAGCTCAGCGTTTGAAGCAGC
GGACAGAGTACGATATCGAAATGCTGCGCGAGATGGGCTATACAAATGGGGTTGAAAACTATTCACGCCATATGGATGGC
CGTAGCGAAGGTGAGCCACCTTATACGCTTCTCGACTTCTTTCCAGATGATTTCTTGATTATGATTGACGAGAGTCATAT
GACTATGGGACAAATCAAAGGTATGTACAATGGTGACCGTTCGCGTAAGGAAATGCTGGTTAATTATGGTTTCCGTTTGC
CATCAGCTTTGGACAATCGTCCTCTCCGTCGGGAGGAGTTTGAGAGTCACGTTCATCAGATTGTTTACGTTTCAGCGACA
CCTGGTGACTATGAAAATGAACAGACCGAGACAGTGATTGAGCAAATCATTCGTCCAACAGGACTCTTGGATCCAGAGGT
AGAAGTCCGTCCGACTATGGGACAGATTGATGACCTTTTGGGTGAAATCAATGCCCGTGTTGAAAAGAATGAACGAACCT
TTATCACCACTTTGACTAAGAAAATGGCAGAGGACTTGACCGACTACTTCAAGGAAATGGGTATCAAGGTCAAGTACATG
CACTCGGATATCAAGACCTTGGAACGGACGGAGATTATCCGTGATCTGCGCTTGGGTGTCTTTGATGTCTTGGTCGGAAT
TAACCTGCTCCGTGAAGGGATTGACGTACCTGAAGTGAGTCTCGTAGCCATTCTAGATGCTGACAAGGAAGGCTTCCTCC
GTAACGAACGTGGCTTAATCCAAACTATTGGACGTGCTGCCCGTAACAGCGAAGGACATGTCATCATGTATGCGGACACG
ATGACTCAGTCTATGCAACGTGCCATTGATGAAACTGCCCGCCGTCGGAAAATCCAGATGGCTTATAATGAAGAGCATGG
TATCGTACCTCAAACCATCAAGAAAGAAATCCGTGATCTTATTGCCGTGACCAAGGCAGTTGCTAAGGAAGAGGACAAGG
AAGTCGATATTAATAGCCTTAATAAACAAGAACGCAAAGACCTCGTCAAGAAACTAGAAAAACAAATGCAAGAAGCTGTC
GAAGTGCTTGACTTTGAACTCGCAGCTCAGATTCGTGATATGATGCTGGAAGTCAAGGCGTTGGATTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(627-660)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

99.396

100

0.994
  uvrB Streptococcus pneumoniae D39

99.396

100

0.994
  uvrB Streptococcus pneumoniae TIGR4

99.245

100

0.992